From ca5bb541d730e13ed3707c6d1396f82c655de1ef Mon Sep 17 00:00:00 2001 From: EladH1 Date: Thu, 8 Jan 2026 09:27:53 +0100 Subject: [PATCH 01/12] add unmapped --- modules/nf-core/bbmap/bbsplit/main.nf | 3 +++ 1 file changed, 3 insertions(+) diff --git a/modules/nf-core/bbmap/bbsplit/main.nf b/modules/nf-core/bbmap/bbsplit/main.nf index c9af070c577d..901894d6a86f 100644 --- a/modules/nf-core/bbmap/bbsplit/main.nf +++ b/modules/nf-core/bbmap/bbsplit/main.nf @@ -64,6 +64,7 @@ process BBMAP_BBSPLIT { } fastq_in = meta.single_end ? "in=${reads}" : "in=${reads[0]} in2=${reads[1]}" fastq_out = meta.single_end ? "basename=${prefix}_%.fastq.gz" : "basename=${prefix}_%_#.fastq.gz" + fastq_unmapped = meta.single_end ? "outu=${prefix}_unmapped.fastq.gz" : "outu=${prefix}_unmapped_#.fastq.gz" refstats_cmd = 'refstats=' + prefix + '.stats.txt' } """ @@ -93,6 +94,7 @@ process BBMAP_BBSPLIT { $fastq_in \\ $fastq_out \\ $refstats_cmd \\ + $fastq_unmapped \\ $args 2>| >(tee ${prefix}.log >&2) # Summary files will have an absolute path that will make the index @@ -128,6 +130,7 @@ process BBMAP_BBSPLIT { echo '' | gzip > ${prefix}_primary.fastq.gz ${other_refs} touch ${prefix}.stats.txt + touch ${prefix}_unmapped.fastq.gz fi touch ${prefix}.log From 082905ad0dc053a95f8645d21e8919c1f4cf6eb7 Mon Sep 17 00:00:00 2001 From: EladH1 Date: Thu, 8 Jan 2026 11:02:31 +0100 Subject: [PATCH 02/12] test --- modules/nf-core/bbmap/bbsplit/main.nf | 1 + .../nf-core/bbmap/bbsplit/tests/main.nf.test.snap | 12 ++++++------ 2 files changed, 7 insertions(+), 6 deletions(-) diff --git a/modules/nf-core/bbmap/bbsplit/main.nf b/modules/nf-core/bbmap/bbsplit/main.nf index 901894d6a86f..f00f625f8169 100644 --- a/modules/nf-core/bbmap/bbsplit/main.nf +++ b/modules/nf-core/bbmap/bbsplit/main.nf @@ -46,6 +46,7 @@ process BBMAP_BBSPLIT { def fastq_out='' def index_files='' def refstats_cmd='' + def fastq_unmapped='' def use_index = index ? true : false if (only_build_index) { diff --git a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap index 7e739a66305c..92bdf909d7f8 100644 --- a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap +++ b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap @@ -24,10 +24,10 @@ ] ], "meta": { - "nf-test": "0.9.2", - "nextflow": "25.10.0" + "nf-test": "0.9.3", + "nextflow": "25.10.2" }, - "timestamp": "2025-11-07T12:36:23.511852" + "timestamp": "2026-01-08T11:01:59.015789016" }, "sarscov2_se_fastq_fasta_chr22_fasta - build index": { "content": [ @@ -36,9 +36,9 @@ ] ], "meta": { - "nf-test": "0.9.2", - "nextflow": "25.10.0" + "nf-test": "0.9.3", + "nextflow": "25.10.2" }, - "timestamp": "2025-11-07T11:05:45.517832" + "timestamp": "2026-01-08T10:45:18.876168101" } } \ No newline at end of file From ec4e1ec2d60e24e7bf3a0933ed81fb71afafd12e Mon Sep 17 00:00:00 2001 From: EladH1 Date: Fri, 23 Jan 2026 10:39:41 +0100 Subject: [PATCH 03/12] emit --- modules/nf-core/bbmap/bbsplit/main.nf | 1 + 1 file changed, 1 insertion(+) diff --git a/modules/nf-core/bbmap/bbsplit/main.nf b/modules/nf-core/bbmap/bbsplit/main.nf index f00f625f8169..f227e807eb72 100644 --- a/modules/nf-core/bbmap/bbsplit/main.nf +++ b/modules/nf-core/bbmap/bbsplit/main.nf @@ -18,6 +18,7 @@ process BBMAP_BBSPLIT { output: path "bbsplit_index" , optional:true, emit: index tuple val(meta), path('*primary*fastq.gz'), optional:true, emit: primary_fastq + tuple val(meta), path('*unmapped*fastq.gz'), optional:true, emit: unmapped_fastq tuple val(meta), path('*fastq.gz') , optional:true, emit: all_fastq tuple val(meta), path('*txt') , optional:true, emit: stats tuple val(meta), path('*.log') , optional:true, emit: log From b7c77a42ddc39bdf4f8f78e5f1deb3748c0e4518 Mon Sep 17 00:00:00 2001 From: Elad Herz Date: Fri, 23 Jan 2026 16:51:30 +0000 Subject: [PATCH 04/12] lint --- modules/nf-core/bbmap/bbsplit/meta.yml | 28 ++++++++++++++++++-------- 1 file changed, 20 insertions(+), 8 deletions(-) diff --git a/modules/nf-core/bbmap/bbsplit/meta.yml b/modules/nf-core/bbmap/bbsplit/meta.yml index ecab992d0df7..34315e60f1fa 100644 --- a/modules/nf-core/bbmap/bbsplit/meta.yml +++ b/modules/nf-core/bbmap/bbsplit/meta.yml @@ -1,5 +1,6 @@ name: bbmap_bbsplit -description: Split sequencing reads by mapping them to multiple references simultaneously +description: Split sequencing reads by mapping them to multiple references + simultaneously keywords: - align - map @@ -8,8 +9,8 @@ keywords: - reference tools: - bbmap: - description: BBMap is a short read aligner, as well as various other bioinformatic - tools. + description: BBMap is a short read aligner, as well as various other + bioinformatic tools. homepage: https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/ documentation: https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/ licence: ["UC-LBL license (see package)"] @@ -40,7 +41,8 @@ input: description: List of other reference ids apart from the primary - other_ref_paths: type: list - description: Path to other references paths corresponding to "other_ref_names" + description: Path to other references paths corresponding to + "other_ref_names" - only_build_index: type: string description: true = only build index; false = mapping @@ -62,6 +64,18 @@ output: pattern: "*primary*fastq.gz" ontologies: - edam: http://edamontology.org/format_3989 # GZIP format + unmapped_fastq: + - - meta: + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] + - "*unmapped*fastq.gz": + type: file + description: Output reads that do not map to any reference + pattern: "*unmapped*fastq.gz" + ontologies: + - edam: http://edamontology.org/format_3989 # GZIP format all_fastq: - - meta: type: map @@ -103,10 +117,9 @@ output: - bbmap: type: string description: The tool name - - bbversion.sh | grep -v "Duplicate cpuset": + - bbversion.sh | grep -v "Duplicate cpuset: type: eval description: The expression to obtain the version of the tool - topics: versions: - - ${task.process}: @@ -115,10 +128,9 @@ topics: - bbmap: type: string description: The tool name - - bbversion.sh | grep -v "Duplicate cpuset": + - bbversion.sh | grep -v "Duplicate cpuset: type: eval description: The expression to obtain the version of the tool - authors: - "@joseespinosa" - "@drpatelh" From dc9f2680e45b7684e04c1252b73a5eff11a0051d Mon Sep 17 00:00:00 2001 From: Elad Herz Date: Fri, 23 Jan 2026 17:22:04 +0000 Subject: [PATCH 05/12] lint2 --- modules/nf-core/bbmap/bbsplit/meta.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/nf-core/bbmap/bbsplit/meta.yml b/modules/nf-core/bbmap/bbsplit/meta.yml index 34315e60f1fa..5ab8a222ec7a 100644 --- a/modules/nf-core/bbmap/bbsplit/meta.yml +++ b/modules/nf-core/bbmap/bbsplit/meta.yml @@ -70,7 +70,7 @@ output: description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - - "*unmapped*fastq.gz": + - "*unmapped*fastq.gz": type: file description: Output reads that do not map to any reference pattern: "*unmapped*fastq.gz" @@ -117,7 +117,7 @@ output: - bbmap: type: string description: The tool name - - bbversion.sh | grep -v "Duplicate cpuset: + - bbversion.sh | grep -v "Duplicate cpuset: type: eval description: The expression to obtain the version of the tool topics: @@ -128,7 +128,7 @@ topics: - bbmap: type: string description: The tool name - - bbversion.sh | grep -v "Duplicate cpuset: + - bbversion.sh | grep -v "Duplicate cpuset: type: eval description: The expression to obtain the version of the tool authors: From e6ad566d1bba1f11149c0410825c12f046bf50e0 Mon Sep 17 00:00:00 2001 From: EladH1 Date: Fri, 23 Jan 2026 11:03:36 +0100 Subject: [PATCH 06/12] meta --- modules/nf-core/bbmap/bbsplit/meta.yml | 18 ++----- .../meta.yml | 53 +++++++++++++------ 2 files changed, 40 insertions(+), 31 deletions(-) diff --git a/modules/nf-core/bbmap/bbsplit/meta.yml b/modules/nf-core/bbmap/bbsplit/meta.yml index 5ab8a222ec7a..f82ad1dd49c9 100644 --- a/modules/nf-core/bbmap/bbsplit/meta.yml +++ b/modules/nf-core/bbmap/bbsplit/meta.yml @@ -64,18 +64,6 @@ output: pattern: "*primary*fastq.gz" ontologies: - edam: http://edamontology.org/format_3989 # GZIP format - unmapped_fastq: - - - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] - - "*unmapped*fastq.gz": - type: file - description: Output reads that do not map to any reference - pattern: "*unmapped*fastq.gz" - ontologies: - - edam: http://edamontology.org/format_3989 # GZIP format all_fastq: - - meta: type: map @@ -117,9 +105,10 @@ output: - bbmap: type: string description: The tool name - - bbversion.sh | grep -v "Duplicate cpuset: + - bbversion.sh | grep -v "Duplicate cpuset": type: eval description: The expression to obtain the version of the tool + topics: versions: - - ${task.process}: @@ -128,9 +117,10 @@ topics: - bbmap: type: string description: The tool name - - bbversion.sh | grep -v "Duplicate cpuset: + - bbversion.sh | grep -v "Duplicate cpuset": type: eval description: The expression to obtain the version of the tool + authors: - "@joseespinosa" - "@drpatelh" diff --git a/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml b/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml index 644a567a5c1d..2a433794301e 100644 --- a/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml +++ b/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml @@ -1,5 +1,7 @@ name: "fastq_qc_trim_filter_setstrandedness" -description: Performs linting, quality control, trimming, filtering, and strandedness determination on RNA-seq FASTQ files, preparing them for downstream analysis. +description: Performs linting, quality control, trimming, filtering, and + strandedness determination on RNA-seq FASTQ files, preparing them for + downstream analysis. keywords: - fastq - rnaseq @@ -94,7 +96,8 @@ input: description: BBSplit index directory or tar.gz archive pattern: "{*,*.tar.gz}" - ch_rrna_fastas: - description: Channel containing one or more FASTA files containing rRNA sequences for use with SortMeRNA or Bowtie2 + description: Channel containing one or more FASTA files containing rRNA + sequences for use with SortMeRNA or Bowtie2 structure: - meta: type: map @@ -105,7 +108,8 @@ input: pattern: "*.{fa,fasta}" - skip_bbsplit: type: boolean - description: Whether to skip BBSplit for removal of non-reference genome reads + description: Whether to skip BBSplit for removal of non-reference genome + reads - skip_fastqc: type: boolean description: Whether to skip FastQC @@ -114,7 +118,8 @@ input: description: Whether to skip trimming - skip_umi_extract: type: boolean - description: Skip the UMI extraction from the read in case the UMIs have been moved to the headers in advance of the pipeline run + description: Skip the UMI extraction from the read in case the UMIs have + been moved to the headers in advance of the pipeline run - skip_linting: type: boolean description: Whether to skip linting of FastQ files @@ -126,14 +131,16 @@ input: description: Whether to create sortmerna index before running sortmerna - make_bowtie2_index: type: boolean - description: Whether to create bowtie2 index before running bowtie2 for rRNA removal + description: Whether to create bowtie2 index before running bowtie2 for rRNA + removal - trimmer: type: string description: Specifies the trimming tool to use enum: ["trimgalore", "fastp"] - min_trimmed_reads: type: integer - description: Minimum number of trimmed reads below which samples are removed from further processing + description: Minimum number of trimmed reads below which samples are removed + from further processing - save_trimmed: type: boolean description: Save the trimmed FastQ files in the results directory? @@ -153,15 +160,33 @@ input: description: Enable UMI-based read deduplication - umi_discard_read: type: integer - description: After UMI barcode extraction discard either R1 or R2 by setting this parameter to 1 or 2, respectively + description: After UMI barcode extraction discard either R1 or R2 by setting + this parameter to 1 or 2, respectively - stranded_threshold: type: float min: 0.5 - description: The fraction of stranded reads that must be assigned to a strandedness for confident assignment. Must be at least 0.5. + description: The fraction of stranded reads that must be assigned to a + strandedness for confident assignment. Must be at least 0.5. - unstranded_threshold: type: float - description: The difference in fraction of stranded reads assigned to 'forward' and 'reverse' below which a sample is classified as 'unstranded'. + description: The difference in fraction of stranded reads assigned to + 'forward' and 'reverse' below which a sample is classified as + 'unstranded'. + - //: + description: "" + - //: + description: "" + - //: + description: "" + - //: + description: "" + - //: + description: "" + - //: + description: "" + - //: + description: "" output: - reads: description: Preprocessed fastq reads @@ -174,7 +199,8 @@ output: description: Preprocessed FastQ files pattern: "*.{fq,fastq},{,.gz}" - multiqc_files: - description: MultiQC-compatible output files from tools used in preprocessing + description: MultiQC-compatible output files from tools used in + preprocessing structure: - meta: type: map @@ -192,13 +218,6 @@ output: - count: type: integer description: Number of reads after trimming - - versions: - description: File containing software versions - structure: - - versions: - type: file - description: File containing software versions - pattern: "versions.yml" - lint_log: description: Log files from FastQ linting structure: From bbb45cd8ecb528e098bd7807483d64f372a9ec22 Mon Sep 17 00:00:00 2001 From: EladH1 Date: Tue, 27 Jan 2026 14:37:56 +0100 Subject: [PATCH 07/12] snapshop --- modules/nf-core/bbmap/bbsplit/tests/main.nf.test | 1 + modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap | 11 ++++++++++- 2 files changed, 11 insertions(+), 1 deletion(-) diff --git a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test index 82985102f266..99d390cfb7fd 100644 --- a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test +++ b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test @@ -103,6 +103,7 @@ nextflow_process { { assert path(process.out.log[0][1]).text.contains("If you wish to regenerate the index") }, { assert snapshot( process.out.primary_fastq, + process.out.unmapped_fastq, process.out.stats, process.out.findAll { key, val -> key.startsWith("versions") } ).match()} diff --git a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap index b5fbb54f36e9..da0ddac86bed 100644 --- a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap +++ b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap @@ -10,6 +10,15 @@ "test_primary.fastq.gz:md5,4161df271f9bfcd25d5845a1e220dbec" ] ], + [ + [ + { + "id": "test", + "single_end": true + }, + "test_unmapped.fastq.gz:md5,d41d8cd98f00b204e9800998ecf8427e" + ] + ], [ [ { @@ -33,7 +42,7 @@ "nf-test": "0.9.3", "nextflow": "25.10.2" }, - "timestamp": "2026-01-19T14:51:21.775776" + "timestamp": "2026-01-27T14:37:23.468663654" }, "sarscov2_se_fastq_fasta_chr22_fasta - build index": { "content": [ From 5ca9b3dee02309969836b1e40acf055b336d015e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Matthias=20H=C3=B6rtenhuber?= Date: Wed, 28 Jan 2026 10:21:33 +0100 Subject: [PATCH 08/12] Update subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml --- .../fastq_qc_trim_filter_setstrandedness/meta.yml | 14 -------------- 1 file changed, 14 deletions(-) diff --git a/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml b/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml index 2a433794301e..69b4c262a716 100644 --- a/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml +++ b/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml @@ -173,20 +173,6 @@ input: 'forward' and 'reverse' below which a sample is classified as 'unstranded'. - - //: - description: "" - - //: - description: "" - - //: - description: "" - - //: - description: "" - - //: - description: "" - - //: - description: "" - - //: - description: "" output: - reads: description: Preprocessed fastq reads From b10c9ba50685298e2c1c01de8242862072b481ac Mon Sep 17 00:00:00 2001 From: mashehu Date: Wed, 28 Jan 2026 10:28:16 +0100 Subject: [PATCH 09/12] fix meta.yml --- modules/nf-core/bbmap/bbsplit/meta.yml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/modules/nf-core/bbmap/bbsplit/meta.yml b/modules/nf-core/bbmap/bbsplit/meta.yml index f82ad1dd49c9..5cbf6d2dd057 100644 --- a/modules/nf-core/bbmap/bbsplit/meta.yml +++ b/modules/nf-core/bbmap/bbsplit/meta.yml @@ -109,6 +109,18 @@ output: type: eval description: The expression to obtain the version of the tool + unmapped_fastq: + - - meta: + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] + - "*unmapped*fastq.gz": + type: file + description: Unmapped FASTQ file + pattern: "*unmapped*fastq.gz" + ontologies: + - edam: http://edamontology.org/format_3989 # GZIP format topics: versions: - - ${task.process}: From 4321b0885bbe4cc9d4a460a2c62e859087f8bbcd Mon Sep 17 00:00:00 2001 From: EladH1 Date: Wed, 28 Jan 2026 13:17:17 +0100 Subject: [PATCH 10/12] 1 --- modules/nf-core/bbmap/bbsplit/meta.yml | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/modules/nf-core/bbmap/bbsplit/meta.yml b/modules/nf-core/bbmap/bbsplit/meta.yml index 5cbf6d2dd057..02a0d27f4380 100644 --- a/modules/nf-core/bbmap/bbsplit/meta.yml +++ b/modules/nf-core/bbmap/bbsplit/meta.yml @@ -64,6 +64,18 @@ output: pattern: "*primary*fastq.gz" ontologies: - edam: http://edamontology.org/format_3989 # GZIP format + unmapped_fastq: + - - meta: + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] + - "*unmapped*fastq.gz": + type: file + description: Unmapped FASTQ file + pattern: "*unmapped*fastq.gz" + ontologies: + - edam: http://edamontology.org/format_3989 # GZIP format all_fastq: - - meta: type: map @@ -109,18 +121,6 @@ output: type: eval description: The expression to obtain the version of the tool - unmapped_fastq: - - - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] - - "*unmapped*fastq.gz": - type: file - description: Unmapped FASTQ file - pattern: "*unmapped*fastq.gz" - ontologies: - - edam: http://edamontology.org/format_3989 # GZIP format topics: versions: - - ${task.process}: From 4600f8f9e45f7ac9fdaf96ad0e4fb3df7b7bbe48 Mon Sep 17 00:00:00 2001 From: EladH1 Date: Wed, 28 Jan 2026 16:53:13 +0100 Subject: [PATCH 11/12] check the alignment with 'mixed' source fq --- modules/nf-core/bbmap/bbsplit/tests/main.nf.test | 2 +- modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test index 99d390cfb7fd..5bc75577f2ab 100644 --- a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test +++ b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test @@ -87,7 +87,7 @@ nextflow_process { """ input[0] = Channel.of([ [ id:'test', single_end:true ], // meta map - file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastq/test_1.fastq.gz', checkIfExists: true) + file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastq/sarscov2_mus-musculus.fastq.gz', checkIfExists: true) ]) input[1] = BBMAP_BBSPLIT_INDEX.out.index input[2] = [] diff --git a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap index da0ddac86bed..36965d59659e 100644 --- a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap +++ b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap @@ -16,7 +16,7 @@ "id": "test", "single_end": true }, - "test_unmapped.fastq.gz:md5,d41d8cd98f00b204e9800998ecf8427e" + "test_unmapped.fastq.gz:md5,f1295a81e67b9dc465b039d497c5f593" ] ], [ @@ -25,7 +25,7 @@ "id": "test", "single_end": true }, - "test.stats.txt:md5,2cbf69b72e5f4f8508306b54e8fe2861" + "test.stats.txt:md5,dfdb1be5d832dfecca787ced0bdf6d2a" ] ], { @@ -42,7 +42,7 @@ "nf-test": "0.9.3", "nextflow": "25.10.2" }, - "timestamp": "2026-01-27T14:37:23.468663654" + "timestamp": "2026-01-28T14:48:51.735924391" }, "sarscov2_se_fastq_fasta_chr22_fasta - build index": { "content": [ From 5a9cb11316fed6498a8a8ac447a0dad9e28d3148 Mon Sep 17 00:00:00 2001 From: EladH1 Date: Wed, 28 Jan 2026 17:04:46 +0100 Subject: [PATCH 12/12] conda also --- modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap index 36965d59659e..7fc2a9dbdc4f 100644 --- a/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap +++ b/modules/nf-core/bbmap/bbsplit/tests/main.nf.test.snap @@ -16,7 +16,7 @@ "id": "test", "single_end": true }, - "test_unmapped.fastq.gz:md5,f1295a81e67b9dc465b039d497c5f593" + "test_unmapped.fastq.gz:md5,c513990406ea4296dfd81073adcdb6e1" ] ], [ @@ -42,7 +42,7 @@ "nf-test": "0.9.3", "nextflow": "25.10.2" }, - "timestamp": "2026-01-28T14:48:51.735924391" + "timestamp": "2026-01-28T17:04:15.937554023" }, "sarscov2_se_fastq_fasta_chr22_fasta - build index": { "content": [