From b55d03c2c4863c76dd69b713d41c9c8295c8dbda Mon Sep 17 00:00:00 2001
From: Jover Lee <joverlee521@gmail.com>
Date: Tue, 23 Sep 2025 14:17:13 -0700
Subject: [PATCH] Register workflows in nextstrain-pathogen.yaml

Depends on merge and release of
https://github.com/nextstrain/cli/pull/472
---
 nextstrain-pathogen.yaml | 12 ++++++++++--
 1 file changed, 10 insertions(+), 2 deletions(-)

diff --git a/nextstrain-pathogen.yaml b/nextstrain-pathogen.yaml
index 7a31ac3..16abff0 100644
--- a/nextstrain-pathogen.yaml
+++ b/nextstrain-pathogen.yaml
@@ -6,5 +6,13 @@
 # This file's *contents* is the "registration metadata" for the pathogen repo,
 # used by `nextstrain setup` and `nextstrain run`.
 ---
-compatibility:
-  nextstrain run: true
\ No newline at end of file
+workflows:
+  ingest:
+    compatibility:
+      nextstrain run: True
+  phylogenetic:
+    compatibility:
+      nextstrain run: True
+  nextclade:
+    compatibility:
+      nextstrain run: True