From 1d671f236373e5bd6af220a5b917df4828e74e91 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 15 Dec 2025 08:06:56 +0000 Subject: [PATCH 1/2] build(deps): bump actions/upload-artifact from 5 to 6 Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 5 to 6. - [Release notes](https://github.com/actions/upload-artifact/releases) - [Commits](https://github.com/actions/upload-artifact/compare/v5...v6) --- updated-dependencies: - dependency-name: actions/upload-artifact dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/pathogen-repo-build.yaml | 2 +- .github/workflows/pathogen-repo-ci.yaml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/pathogen-repo-build.yaml b/.github/workflows/pathogen-repo-build.yaml index 2109a7d..ef31dfc 100644 --- a/.github/workflows/pathogen-repo-build.yaml +++ b/.github/workflows/pathogen-repo-build.yaml @@ -349,7 +349,7 @@ jobs: "$NEXTSTRAIN_GITHUB_DIR"/bin/interpolate-env < "$NEXTSTRAIN_GITHUB_DIR"/text-templates/attach-aws-batch.md \ > "$GITHUB_STEP_SUMMARY" - if: always() - uses: actions/upload-artifact@v5 + uses: actions/upload-artifact@v6 with: if-no-files-found: warn name: ${{ inputs.artifact-name }} diff --git a/.github/workflows/pathogen-repo-ci.yaml b/.github/workflows/pathogen-repo-ci.yaml index ecf6201..29c3b49 100644 --- a/.github/workflows/pathogen-repo-ci.yaml +++ b/.github/workflows/pathogen-repo-ci.yaml @@ -295,7 +295,7 @@ jobs: id: nextclade run: nextstrain build nextclade --configfile build-configs/ci/config.yaml - if: always() - uses: actions/upload-artifact@v5 + uses: actions/upload-artifact@v6 with: name: ${{ inputs.artifact-name }}-${{ matrix.runtime }} if-no-files-found: ignore From d4cfac564620b67223343202876edd699e5f7c33 Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Mon, 5 Jan 2026 11:31:13 -0800 Subject: [PATCH 2/2] Update template files Dependabot changed the generated workflow files. The template files must be updated too. --- .github/workflows/pathogen-repo-build.yaml.in | 2 +- .github/workflows/pathogen-repo-ci.yaml.in | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/pathogen-repo-build.yaml.in b/.github/workflows/pathogen-repo-build.yaml.in index 01d0343..9849f8d 100644 --- a/.github/workflows/pathogen-repo-build.yaml.in +++ b/.github/workflows/pathogen-repo-build.yaml.in @@ -330,7 +330,7 @@ jobs: > "$GITHUB_STEP_SUMMARY" - if: always() - uses: actions/upload-artifact@v5 + uses: actions/upload-artifact@v6 with: if-no-files-found: warn name: ${{ inputs.artifact-name }} diff --git a/.github/workflows/pathogen-repo-ci.yaml.in b/.github/workflows/pathogen-repo-ci.yaml.in index 7ee6153..35c0dbe 100644 --- a/.github/workflows/pathogen-repo-ci.yaml.in +++ b/.github/workflows/pathogen-repo-ci.yaml.in @@ -275,7 +275,7 @@ jobs: run: nextstrain build nextclade --configfile build-configs/ci/config.yaml - if: always() - uses: actions/upload-artifact@v5 + uses: actions/upload-artifact@v6 with: name: ${{ inputs.artifact-name }}-${{ matrix.runtime }} if-no-files-found: ignore