Skip to content

Add OME-TIFF (actually OME-XML) normalization step before SPRM proper #81

@mruffalo

Description

@mruffalo

New versions of the tifffile and aicsimagio libraries have trouble reading some OME-TIFF images, including the outputs of our CODEX pipeline and 3D IMC datasets.

Add a pipeline step before SPRM that uses bfconvert to normalize the OME-XML metadata.

Metadata

Metadata

Assignees

Labels

No labels
No labels

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions