Subset of Seurat object

[mvereten]

Dear NICHES team,

When I run the RunNICHES function on the wholde Seurat object, everything is ok, byt when I subset to a group of cells using specific fov's only, the function fails with the error as below:

Is this something yuou could comment on?

Many thanks,
Maria

[msraredon]

Can you provide replicable code example? We will try to troubleshoot