To Fix: error with windows file paths

[cmwilson24]

[ych73]

hello! I'm having the exact same issue- were you ever able to find a solution?
Thank you,
Yeonjoo

[ych73]

in case anyone else is still having this issue- I realized that I only have this issue if my conditions don't all have the same number of replicates. I included multiple experiments in my config file because I thought that specifying the samples to compare would allow me to run the analysis for all experiments at once, but this caused an issue since some experiments had 1 replicate, while others had 2, etc. It worked when I ran each experiment separately.

[HannahNeuendorf]

Error is the result of a Windows path issue as the parser tries to split the directory in the filled out experiment config file at the ':' . Ensuring there are no colons in the file names fixed the issue. e.g. Demo\Step2\count_files\Demo_index10_full.counts:T0|Rep1 instead of C:\ScreenProcessing-master\Demo etc.