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Hi,
I want to test racon_wrapper v1.5.0, with the following command:
racon_wrapper \\
-t ${task.cpus} \\
-u --no-trimming \\
--split 16000000 \\
${fastq_file} ${sam_file} ${genome_file} 1> ${file_name}.racon_polished.fa
Unfortunately, this is the output error:
usage: racon_wrapper [-h] [--split SPLIT] [--subsample SUBSAMPLE SUBSAMPLE]
[-u] [-f] [-w WINDOW_LENGTH] [-q QUALITY_THRESHOLD]
[-e ERROR_THRESHOLD] [-m MATCH] [-x MISMATCH] [-g GAP]
[-t THREADS]
[--cudaaligner-band-width CUDAALIGNER_BAND_WIDTH]
[--cudaaligner-batches CUDAALIGNER_BATCHES]
[-c CUDAPOA_BATCHES] [-b]
sequences overlaps target_sequences
racon_wrapper: error: unrecognized arguments: --no-trimming
So I want to ask, is this the expected behaviour and I should not use the --no-trimming parameter?
Kind regards,
Salvador
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