diff --git a/software_info/README.md b/software_info/README.md index 2ded3cf..c3a9edd 100644 --- a/software_info/README.md +++ b/software_info/README.md @@ -3,33 +3,37 @@ This document summarizes the latest stats of all the software published on the KrishnanLab GitHub organization. -| Name | Stars | Forks | Package name | Weekly downloads | Monthly downloads | Zenodo | -|:------------------------------------------------------------------------------------------------------|--------:|--------:|:---------------|:-------------------|:--------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [PecanPy](https://github.com/krishnanlab/PecanPy) | 133 | 20 | pecanpy | 157.0 | 617.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437) | -| [teaching](https://github.com/krishnanlab/teaching) | 23 | 19 | - | - | - | - | -| [txt2onto](https://github.com/krishnanlab/txt2onto) | 23 | 5 | - | - | - | - | -| [obnb](https://github.com/krishnanlab/obnb) | 18 | 0 | obnb | 5.0 | 22.0 | - | -| [PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus) | 18 | 2 | geneplexus | 23.0 | 126.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6383205.svg)](https://doi.org/10.5281/zenodo.6383205) | -| [RNAseq_coexpression](https://github.com/krishnanlab/RNAseq_coexpression) | 10 | 3 | - | - | - | - | -| [GenePlexus](https://github.com/krishnanlab/GenePlexus) | 9 | 3 | - | - | - | - | -| [Expresto](https://github.com/krishnanlab/Expresto) | 6 | 4 | - | - | - | - | -| [PecanPy_benchmarks](https://github.com/krishnanlab/PecanPy_benchmarks) | 5 | 0 | - | - | - | - | -| [talks](https://github.com/krishnanlab/talks) | 2 | 3 | - | - | - | - | -| [obnbench](https://github.com/krishnanlab/obnbench) | 2 | 0 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8048305.svg)](https://doi.org/10.5281/zenodo.8048305)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8045270.svg)](https://doi.org/10.5281/zenodo.8045270) | -| [pydab](https://github.com/krishnanlab/pydab) | 2 | 0 | pydab | 9.0 | 39.0 | - | -| [node2vecplus_benchmarks](https://github.com/krishnanlab/node2vecplus_benchmarks) | 2 | 1 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7573612.svg)](https://doi.org/10.5281/zenodo.7573612)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7007164.svg)](https://doi.org/10.5281/zenodo.7007164) | -| [MCC-F1-Curve-and-Metrics](https://github.com/krishnanlab/MCC-F1-Curve-and-Metrics) | 2 | 1 | - | - | - | - | -| [geneplexus_app](https://github.com/krishnanlab/geneplexus_app) | 1 | 0 | - | - | - | - | -| [ASD-gene-prediction-Krishnan2016](https://github.com/krishnanlab/ASD-gene-prediction-Krishnan2016) | 1 | 0 | - | - | - | - | -| [GenePlexusZoo-Mancusript](https://github.com/krishnanlab/GenePlexusZoo-Mancusript) | 1 | 0 | - | - | - | - | -| [cone](https://github.com/krishnanlab/cone) | 1 | 0 | cone | 15.0 | 42.0 | - | -| [ECRE_student](https://github.com/krishnanlab/ECRE_student) | 0 | 0 | - | - | - | - | -| [chronic-inflammation](https://github.com/krishnanlab/chronic-inflammation) | 0 | 0 | - | - | - | - | -| [simplex](https://github.com/krishnanlab/simplex) | 0 | 0 | - | - | - | - | -| [NetworkLearningEval](https://github.com/krishnanlab/NetworkLearningEval) | 0 | 0 | - | - | - | - | -| [gp-gcp-frontend](https://github.com/krishnanlab/gp-gcp-frontend) | 0 | 0 | - | - | - | - | -| [Age-sex_signatures_in_humans_code](https://github.com/krishnanlab/Age-sex_signatures_in_humans_code) | 0 | 0 | - | - | - | - | -| [gene-plexus](https://github.com/krishnanlab/gene-plexus) | 0 | 0 | - | - | - | - | -| [.github](https://github.com/krishnanlab/.github) | 0 | 0 | - | - | - | - | +| Name | Stars | Forks | Package name | Weekly downloads | Monthly downloads | Zenodo | +|:----------------------------------------------------------------------------------------------------------------------------------|--------:|--------:|:---------------|:-------------------|:--------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [PecanPy](https://github.com/krishnanlab/PecanPy) | 172 | 24 | pecanpy | 1134.0 | 4609.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437) | +| [txt2onto](https://github.com/krishnanlab/txt2onto) | 26 | 6 | - | - | - | - | +| [teaching](https://github.com/krishnanlab/teaching) | 23 | 19 | - | - | - | - | +| [obnb](https://github.com/krishnanlab/obnb) | 22 | 1 | obnb | 4.0 | 19.0 | - | +| [PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus) | 20 | 3 | geneplexus | 10.0 | 161.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.14750555.svg)](https://doi.org/10.5281/zenodo.14750555) | +| [RNAseq_coexpression](https://github.com/krishnanlab/RNAseq_coexpression) | 15 | 4 | - | - | - | - | +| [GenePlexus](https://github.com/krishnanlab/GenePlexus) | 10 | 3 | - | - | - | - | +| [Expresto](https://github.com/krishnanlab/Expresto) | 6 | 4 | - | - | - | - | +| [PecanPy_benchmarks](https://github.com/krishnanlab/PecanPy_benchmarks) | 6 | 0 | - | - | - | - | +| [microbiome-metadata-annotation](https://github.com/krishnanlab/microbiome-metadata-annotation) | 4 | 0 | - | - | - | - | +| [pydab](https://github.com/krishnanlab/pydab) | 3 | 0 | pydab | 10.0 | 51.0 | - | +| [cone](https://github.com/krishnanlab/cone) | 3 | 0 | cone | 9.0 | 54.0 | - | +| [node2vecplus_benchmarks](https://github.com/krishnanlab/node2vecplus_benchmarks) | 3 | 1 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7573612.svg)](https://doi.org/10.5281/zenodo.7573612)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7007164.svg)](https://doi.org/10.5281/zenodo.7007164) | +| [talks](https://github.com/krishnanlab/talks) | 2 | 3 | - | - | - | - | +| [obnbench](https://github.com/krishnanlab/obnbench) | 2 | 0 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8048305.svg)](https://doi.org/10.5281/zenodo.8048305)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8045270.svg)](https://doi.org/10.5281/zenodo.8045270) | +| [MCC-F1-Curve-and-Metrics](https://github.com/krishnanlab/MCC-F1-Curve-and-Metrics) | 2 | 1 | - | - | - | - | +| [ASD-gene-prediction-Krishnan2016](https://github.com/krishnanlab/ASD-gene-prediction-Krishnan2016) | 1 | 0 | - | - | - | - | +| [geneplexus-app-old](https://github.com/krishnanlab/geneplexus-app-old) | 1 | 0 | - | - | - | - | +| [geneplexus-app](https://github.com/krishnanlab/geneplexus-app) | 1 | 0 | - | - | - | - | +| [chronic-inflammation](https://github.com/krishnanlab/chronic-inflammation) | 1 | 0 | - | - | - | - | +| [txt2onto2.0](https://github.com/krishnanlab/txt2onto2.0) | 1 | 5 | - | - | - | - | +| [ECRE_student](https://github.com/krishnanlab/ECRE_student) | 0 | 0 | - | - | - | - | +| [NetworkLearningEval](https://github.com/krishnanlab/NetworkLearningEval) | 0 | 0 | - | - | - | - | +| [GenePlexusZoo-Mancusript](https://github.com/krishnanlab/GenePlexusZoo-Mancusript) | 0 | 0 | - | - | - | - | +| [simplex](https://github.com/krishnanlab/simplex) | 0 | 0 | - | - | - | - | +| [gp-gcp-frontend](https://github.com/krishnanlab/gp-gcp-frontend) | 0 | 0 | - | - | - | - | +| [.github](https://github.com/krishnanlab/.github) | 0 | 0 | - | - | - | - | +| [Age-sex_signatures_in_humans_code](https://github.com/krishnanlab/Age-sex_signatures_in_humans_code) | 0 | 0 | - | - | - | - | +| [SNNomics](https://github.com/krishnanlab/SNNomics) | 0 | 0 | - | - | - | - | +| [cross-species-knowledge-transfer-paper-and-data](https://github.com/krishnanlab/cross-species-knowledge-transfer-paper-and-data) | 0 | 0 | - | - | - | - | -Last updated: 2024-02-01 \ No newline at end of file +Last updated: 2025-11-01 \ No newline at end of file diff --git a/software_info/hist/2025-11-01.csv b/software_info/hist/2025-11-01.csv new file mode 100644 index 0000000..5fbd45a --- /dev/null +++ b/software_info/hist/2025-11-01.csv @@ -0,0 +1,31 @@ +,Name,Stars,Forks,Package name,Weekly downloads,Monthly downloads,Zenodo +0,[PecanPy](https://github.com/krishnanlab/PecanPy),172,24,pecanpy,1134.0,4609.0,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437) +1,[txt2onto](https://github.com/krishnanlab/txt2onto),26,6,-,-,-,- +2,[teaching](https://github.com/krishnanlab/teaching),23,19,-,-,-,- +3,[obnb](https://github.com/krishnanlab/obnb),22,1,obnb,4.0,19.0,- +4,[PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus),20,3,geneplexus,10.0,161.0,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.14750555.svg)](https://doi.org/10.5281/zenodo.14750555) +5,[RNAseq_coexpression](https://github.com/krishnanlab/RNAseq_coexpression),15,4,-,-,-,- +6,[GenePlexus](https://github.com/krishnanlab/GenePlexus),10,3,-,-,-,- +7,[Expresto](https://github.com/krishnanlab/Expresto),6,4,-,-,-,- +8,[PecanPy_benchmarks](https://github.com/krishnanlab/PecanPy_benchmarks),6,0,-,-,-,- +9,[microbiome-metadata-annotation](https://github.com/krishnanlab/microbiome-metadata-annotation),4,0,-,-,-,- +10,[pydab](https://github.com/krishnanlab/pydab),3,0,pydab,10.0,51.0,- +11,[cone](https://github.com/krishnanlab/cone),3,0,cone,9.0,54.0,- +12,[node2vecplus_benchmarks](https://github.com/krishnanlab/node2vecplus_benchmarks),3,1,-,-,-,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7573612.svg)](https://doi.org/10.5281/zenodo.7573612)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7007164.svg)](https://doi.org/10.5281/zenodo.7007164) +13,[talks](https://github.com/krishnanlab/talks),2,3,-,-,-,- +14,[obnbench](https://github.com/krishnanlab/obnbench),2,0,-,-,-,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8048305.svg)](https://doi.org/10.5281/zenodo.8048305)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8045270.svg)](https://doi.org/10.5281/zenodo.8045270) +15,[MCC-F1-Curve-and-Metrics](https://github.com/krishnanlab/MCC-F1-Curve-and-Metrics),2,1,-,-,-,- +16,[ASD-gene-prediction-Krishnan2016](https://github.com/krishnanlab/ASD-gene-prediction-Krishnan2016),1,0,-,-,-,- +17,[geneplexus-app-old](https://github.com/krishnanlab/geneplexus-app-old),1,0,-,-,-,- +18,[geneplexus-app](https://github.com/krishnanlab/geneplexus-app),1,0,-,-,-,- +19,[chronic-inflammation](https://github.com/krishnanlab/chronic-inflammation),1,0,-,-,-,- +20,[txt2onto2.0](https://github.com/krishnanlab/txt2onto2.0),1,5,-,-,-,- +21,[ECRE_student](https://github.com/krishnanlab/ECRE_student),0,0,-,-,-,- +22,[NetworkLearningEval](https://github.com/krishnanlab/NetworkLearningEval),0,0,-,-,-,- +23,[GenePlexusZoo-Mancusript](https://github.com/krishnanlab/GenePlexusZoo-Mancusript),0,0,-,-,-,- +24,[simplex](https://github.com/krishnanlab/simplex),0,0,-,-,-,- +25,[gp-gcp-frontend](https://github.com/krishnanlab/gp-gcp-frontend),0,0,-,-,-,- +26,[.github](https://github.com/krishnanlab/.github),0,0,-,-,-,- +27,[Age-sex_signatures_in_humans_code](https://github.com/krishnanlab/Age-sex_signatures_in_humans_code),0,0,-,-,-,- +28,[SNNomics](https://github.com/krishnanlab/SNNomics),0,0,-,-,-,- +29,[cross-species-knowledge-transfer-paper-and-data](https://github.com/krishnanlab/cross-species-knowledge-transfer-paper-and-data),0,0,-,-,-,-