Issue with the script_Table2genomealignment.py #75
Description
Hi!
I tried to prepare a pseudogenome from the VCF file using the script (https://github.com/katholt/RedDog
new_test_marta_pseudogenome.zip
/blob/master/snpTable2GenomeAlignment.py). But, the code does not seem to work. When I tried to run the code on python3, a "ValueError: could not convert string to float: '##FILTER=<ID=PASS'" error was encountered. Here are the attached script, vcf file, and the reference genome. Could you please help me to fix this issue?
Regards,
Krishna