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"./test/test_partition.py": [ + { + "code": "reportUnusedVariable", + "range": { + "startColumn": 14, + "endColumn": 17, + "lineCount": 1 + } + }, + { + "code": "reportCallIssue", + "range": { + "startColumn": 31, + "endColumn": 70, + "lineCount": 1 + } + } + ], + "./test/test_refinement.py": [ + { + "code": "reportUnnecessaryComparison", + "range": { + "startColumn": 11, + "endColumn": 30, + "lineCount": 1 + } + }, + { + "code": "reportUnnecessaryComparison", + "range": { + "startColumn": 13, + "endColumn": 31, + "lineCount": 1 + } + } + ], + "./test/test_visualization.py": [ + { + "code": "reportUnusedVariable", + "range": { + "startColumn": 65, + "endColumn": 66, + "lineCount": 1 + } + } + ] + } +} \ No newline at end of file diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 5e956b77..a2fa5407 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -42,8 +42,7 @@ jobs: curl -L -O https://gitlab.tiker.net/inducer/ci-support/raw/master/prepare-and-run-pylint.sh . ./prepare-and-run-pylint.sh "$(basename $GITHUB_REPOSITORY)" examples/*.py test/test_*.py - mypy: - name: Mypy + basedpyright: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 @@ -51,9 +50,12 @@ jobs: run: | curl -L -O https://tiker.net/ci-support-v0 . ./ci-support-v0 + # pyright is happier with missing packages than installed, untyped ones + sed -i /oct2py/d .test-conda-env-py3.yml + sed -i /h5py/d .test-conda-env-py3.yml build_py_project_in_conda_env - python -m pip install mypy - ./run-mypy.sh + python -m pip install basedpyright + basedpyright pytest3: name: Pytest Conda Py3 diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 29526d15..b11616e7 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -118,19 +118,6 @@ Pylint: except: - tags -Mypy: - script: | - EXTRA_INSTALL="Cython mpi4py" - curl -L -O https://tiker.net/ci-support-v0 - . ./ci-support-v0 - build_py_project_in_venv - python -m pip install mypy - ./run-mypy.sh - tags: - - python3 - except: - - tags - Downstream: parallel: matrix: diff --git a/doc/misc.rst b/doc/misc.rst index da039e07..1b7da0fb 100644 --- a/doc/misc.rst +++ b/doc/misc.rst @@ -106,3 +106,36 @@ AK also gratefully acknowledges a hardware gift from Nvidia Corporation. The views and opinions expressed herein do not necessarily reflect those of the funding agencies. + +References +---------- + +.. class:: ArrayContext + + See :class:`arraycontext.ArrayContext`. + +.. class:: _Mesh + + See :class:`meshmode.mesh.Mesh`. + +.. class:: _MeshElementGroup + + See :class:`meshmode.mesh.MeshElementGroup`. + +.. class:: _DOFArray + + See :class:`meshmode.dof_array.DOFArray`. + +.. class:: DTypeLike + + See :data:`numpy.typing.DTypeLike`. + +.. currentmodule:: np + +.. class:: dtype + + See :class:`numpy.dtype`. + +.. class:: complexfloating + + See :class:`numpy.complexfloating`. diff --git a/meshmode/__init__.py b/meshmode/__init__.py index d891e8f7..a5bf3f6f 100644 --- a/meshmode/__init__.py +++ b/meshmode/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ diff --git a/meshmode/array_context.py b/meshmode/array_context.py index 76661526..054b860c 100644 --- a/meshmode/array_context.py +++ b/meshmode/array_context.py @@ -2,6 +2,8 @@ .. autoclass:: PyOpenCLArrayContext .. autoclass:: PytatoPyOpenCLArrayContext """ +from __future__ import annotations + __copyright__ = "Copyright (C) 2020 Andreas Kloeckner" @@ -25,8 +27,11 @@ THE SOFTWARE. """ +from typing import TYPE_CHECKING from warnings import warn +from typing_extensions import override + from arraycontext import ( PyOpenCLArrayContext as PyOpenCLArrayContextBase, PytatoPyOpenCLArrayContext as PytatoPyOpenCLArrayContextBase, @@ -38,6 +43,11 @@ ) +if TYPE_CHECKING: + import pytato as pt_typ + from loopy import TranslationUnit + + def thaw(actx, ary): warn("meshmode.array_context.thaw is deprecated. Use arraycontext.thaw instead. " "WARNING: The argument order is reversed between these two functions. " @@ -49,7 +59,7 @@ def thaw(actx, ary): # {{{ kernel transform function -def _transform_loopy_inner(t_unit): +def _transform_loopy_inner(t_unit: TranslationUnit): import loopy as lp from arraycontext.transform_metadata import ElementwiseMapKernelTag from pymbolic.primitives import Subscript, Variable @@ -136,6 +146,7 @@ def _transform_loopy_inner(t_unit): "FirstAxisIsElementsTag-tagged kernels must be " "subscripts") + assert isinstance(assignee.aggregate, Variable) if assignee.aggregate.name not in first_axis_el_args: continue @@ -207,7 +218,8 @@ class PyOpenCLArrayContext(PyOpenCLArrayContextBase): See :mod:`meshmode.transform_metadata` for relevant metadata. """ - def transform_loopy_program(self, t_unit): + @override + def transform_loopy_program(self, t_unit: TranslationUnit): default_ep = t_unit.default_entrypoint options = default_ep.options if not (options.return_dict and options.no_numpy): @@ -238,7 +250,8 @@ def transform_loopy_program(self, t_unit): # {{{ pytato pyopencl array context subclass class PytatoPyOpenCLArrayContext(PytatoPyOpenCLArrayContextBase): - def transform_dag(self, dag): + @override + def transform_dag(self, dag: pt_typ.DictOfNamedArrays) -> pt_typ.DictOfNamedArrays: dag = super().transform_dag(dag) # {{{ /!\ Remove tags from NamedArrays @@ -246,7 +259,9 @@ def transform_dag(self, dag): import pytato as pt - def untag_loopy_call_results(expr): + def untag_loopy_call_results( + expr: pt.Array | pt.AbstractResultWithNamedArrays + ) -> pt.Array | pt.AbstractResultWithNamedArrays: if isinstance(expr, pt.NamedArray): return expr.copy(tags=frozenset(), axes=(pt.Axis(frozenset()),)*expr.ndim) @@ -259,7 +274,8 @@ def untag_loopy_call_results(expr): return dag - def transform_loopy_program(self, t_unit): + @override + def transform_loopy_program(self, t_unit: TranslationUnit): # FIXME: Do not parallelize for now. return t_unit diff --git a/meshmode/discretization/__init__.py b/meshmode/discretization/__init__.py index 349cdb12..f5995d6c 100644 --- a/meshmode/discretization/__init__.py +++ b/meshmode/discretization/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2013-2021 Andreas Kloeckner Copyright (C) 2021 University of Illinois Board of Trustees @@ -24,11 +27,11 @@ """ from abc import ABC, abstractmethod -from collections.abc import Hashable, Iterable -from typing import Protocol, runtime_checkable +from typing import TYPE_CHECKING, Protocol, cast, runtime_checkable from warnings import warn import numpy as np +from typing_extensions import override import loopy as lp import modepy as mp @@ -38,7 +41,6 @@ # underscored because it shouldn't be imported from here. from meshmode.dof_array import DOFArray as _DOFArray -from meshmode.mesh import Mesh as _Mesh, MeshElementGroup as _MeshElementGroup from meshmode.transform_metadata import ( ConcurrentDOFInameTag, ConcurrentElementInameTag, @@ -48,6 +50,14 @@ ) +if TYPE_CHECKING: + from collections.abc import Hashable, Iterable, Sequence + + from numpy.typing import DTypeLike + + from meshmode.mesh import Mesh as _Mesh, MeshElementGroup as _MeshElementGroup + + __doc__ = """ Error handling -------------- @@ -97,8 +107,8 @@ class ElementGroupBase(ABC): These correspond one-to-one with :class:`meshmode.mesh.MeshElementGroup`. Responsible for all bulk data handling in :class:`Discretization`. - .. attribute :: mesh_el_group - .. attribute :: order + .. autoattribute :: mesh_el_group + .. autoattribute :: order .. autoattribute:: is_affine .. autoattribute:: nelements @@ -112,6 +122,9 @@ class ElementGroupBase(ABC): .. automethod:: discretization_key """ + mesh_el_group: _MeshElementGroup + order: int + def __init__(self, mesh_el_group: _MeshElementGroup, order: int, @@ -170,7 +183,7 @@ def space(self) -> mp.FunctionSpace: group's reference element. """ - def discretization_key(self) -> Hashable: + def discretization_key(self) -> Sequence[Hashable]: """Return a hashable, equality-comparable object that fully describes the per-element discretization used by this element group. (This should cover all parts of the @@ -202,7 +215,7 @@ def __call__(self, mesh_el_group: _MeshElementGroup) -> ElementGroupBase: # {{{ Nodal element group base -class NodalElementGroupBase(ElementGroupBase): +class NodalElementGroupBase(ElementGroupBase, ABC): """Base class for nodal element groups, defined as finite elements equipped with nodes. Nodes are specific locations defined on the reference element (:attr:`~ElementGroupBase.shape`) @@ -218,6 +231,7 @@ class NodalElementGroupBase(ElementGroupBase): """ @property + @override def nunit_dofs(self) -> int: """The number of (nodal) degrees of freedom ("DOFs") associated with a single element. @@ -254,7 +268,7 @@ def quadrature_rule(self) -> mp.Quadrature: # {{{ Element groups with explicit bases -class ElementGroupWithBasis(ElementGroupBase): +class ElementGroupWithBasis(ElementGroupBase, ABC): """Base class for element groups which possess an explicit basis for the underlying function space :attr:`~ElementGroupBase.space`. @@ -289,8 +303,10 @@ def is_orthonormal_basis(self): # {{{ Element groups suitable for interpolation -class InterpolatoryElementGroupBase(NodalElementGroupBase, - ElementGroupWithBasis): +class InterpolatoryElementGroupBase( + NodalElementGroupBase, + ElementGroupWithBasis, + ABC): """An element group equipped with both an explicit basis for the underlying :attr:`~ElementGroupBase.space`, and a set of nodal locations on the :attr:`~ElementGroupBase.shape`. These element @@ -308,7 +324,7 @@ class InterpolatoryElementGroupBase(NodalElementGroupBase, # {{{ modal element group base -class ModalElementGroupBase(ElementGroupWithBasis): +class ModalElementGroupBase(ElementGroupWithBasis, ABC): """An element group equipped with a function space and a hierarchical basis that is orthonormal with respect to the :math:`L^2` inner product. @@ -317,6 +333,7 @@ class ModalElementGroupBase(ElementGroupWithBasis): """ @property + @override def nunit_dofs(self) -> int: """The number of (modal) degrees of freedom ("DOFs") associated with a single element. @@ -331,9 +348,10 @@ def nunit_dofs(self) -> int: class Discretization: """An unstructured composite discretization. - .. attribute:: real_dtype - .. attribute:: complex_dtype - .. attribute:: mesh + .. autoattribute:: real_dtype + .. autoattribute:: complex_dtype + .. autoattribute:: mesh + .. attribute:: dim .. attribute:: ambient_dim .. attribute:: ndofs @@ -350,11 +368,18 @@ class Discretization: .. automethod:: quad_weights """ + mesh: _Mesh + groups: Sequence[ElementGroupBase] + real_dtype: np.dtype[np.floating] + complex_dtype: np.dtype[np.complexfloating] + + _setup_actx: ArrayContext + def __init__(self, actx: ArrayContext, mesh: _Mesh, group_factory: ElementGroupFactory, - real_dtype: np.dtype | None = None, + real_dtype: DTypeLike = None, _force_actx_clone: bool = True) -> None: """ :arg actx: an :class:`arraycontext.ArrayContext` used to perform @@ -374,7 +399,7 @@ def __init__(self, self.mesh = mesh self.groups = [group_factory(mg) for mg in mesh.groups] - self.real_dtype = np.dtype(real_dtype) + self.real_dtype = cast("np.dtype[np.floating]", np.dtype(real_dtype)) self.complex_dtype = np.dtype({ np.float32: np.complex64, np.float64: np.complex128 @@ -401,7 +426,7 @@ def copy(self, actx: ArrayContext | None = None, mesh: _Mesh | None = None, group_factory: ElementGroupFactory | None = None, - real_dtype: np.dtype | None = None) -> "Discretization": + real_dtype: np.dtype | None = None) -> Discretization: """Creates a new object of the same type with all arguments that are not *None* replaced. The copy is not recursive. """ @@ -444,7 +469,11 @@ def is_modal(self): return all(isinstance(grp, ModalElementGroupBase) for grp in self.groups) - def _new_array(self, actx, creation_func, dtype=None): + def _new_array(self, + actx: ArrayContext, + creation_func, + dtype: DTypeLike = None + ): if dtype is None: dtype = self.real_dtype elif dtype == "c": @@ -555,7 +584,7 @@ def nodes(self, cached: bool = True) -> np.ndarray: if not self.is_nodal: raise ElementGroupTypeError("Element groups must be nodal.") - def resample_mesh_nodes(grp, iaxis): + def resample_mesh_nodes(grp: NodalElementGroupBase, iaxis: int): name_hint = f"nodes{iaxis}_{self.ambient_dim}d" # TODO: would be nice to have the mesh use an array context already nodes = tag_axes(actx, @@ -621,8 +650,8 @@ def num_reference_derivative( @keyed_memoize_in(actx, (num_reference_derivative, "num_reference_derivative_matrix"), - lambda grp, gref_axes: grp.discretization_key() + gref_axes) - def get_mat(grp: ElementGroupBase, gref_axes): + lambda grp, gref_axes: (*grp.discretization_key(), *gref_axes)) + def get_mat(grp: ElementGroupBase, gref_axes: Sequence[int]): if not isinstance(grp, InterpolatoryElementGroupBase): raise ValueError("element groups must be interpolatory " "to allow taking derivatives") @@ -637,6 +666,7 @@ def get_mat(grp: ElementGroupBase, gref_axes): else: mat = next_mat @ mat + assert mat is not None return actx.from_numpy(mat) return _DOFArray(actx, tuple( diff --git a/meshmode/discretization/connection/__init__.py b/meshmode/discretization/connection/__init__.py index e0bed877..eac936df 100644 --- a/meshmode/discretization/connection/__init__.py +++ b/meshmode/discretization/connection/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2014 Andreas Kloeckner Copyright (C) 2018 Alexandru Fikl @@ -24,8 +27,7 @@ """ import logging - -from arraycontext import ArrayContext +from typing import TYPE_CHECKING from meshmode.discretization.connection.chained import ( ChainedDiscretizationConnection, @@ -59,6 +61,10 @@ from meshmode.discretization.connection.same_mesh import make_same_mesh_connection +if TYPE_CHECKING: + from arraycontext import ArrayContext + + logger = logging.getLogger(__name__) diff --git a/meshmode/discretization/connection/chained.py b/meshmode/discretization/connection/chained.py index ba313c64..1384c4d1 100644 --- a/meshmode/discretization/connection/chained.py +++ b/meshmode/discretization/connection/chained.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """Copyright (C) 2018 Alexandru Fikl""" __license__ = """ diff --git a/meshmode/discretization/connection/direct.py b/meshmode/discretization/connection/direct.py index a6f03280..4cc8e86b 100644 --- a/meshmode/discretization/connection/direct.py +++ b/meshmode/discretization/connection/direct.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ @@ -21,9 +24,8 @@ """ from abc import ABC, abstractmethod -from collections.abc import Sequence from dataclasses import dataclass -from typing import Generic +from typing import TYPE_CHECKING, Generic import numpy as np @@ -41,7 +43,6 @@ from arraycontext.metadata import NameHint from pytools import keyed_memoize_method, memoize_in, memoize_method -from meshmode.discretization import Discretization, ElementGroupBase from meshmode.dof_array import DOFArray from meshmode.transform_metadata import ( ConcurrentDOFInameTag, @@ -51,6 +52,12 @@ ) +if TYPE_CHECKING: + from collections.abc import Sequence + + from meshmode.discretization import Discretization, ElementGroupBase + + def _reshape_and_preserve_tags( actx: ArrayContext, ary: ArrayT, new_shape: tuple[int, ...]) -> ArrayT: try: diff --git a/meshmode/discretization/connection/face.py b/meshmode/discretization/connection/face.py index 8d65a1b0..ca94d7c1 100644 --- a/meshmode/discretization/connection/face.py +++ b/meshmode/discretization/connection/face.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ @@ -22,19 +25,24 @@ import logging from dataclasses import dataclass +from typing import TYPE_CHECKING import numpy as np import modepy as mp -from arraycontext import ArrayContext from arraycontext.metadata import NameHint -from meshmode.discretization import Discretization, ElementGroupFactory -from meshmode.discretization.connection.direct import DirectDiscretizationConnection -from meshmode.mesh import BoundaryTag, Mesh from meshmode.transform_metadata import DiscretizationElementAxisTag +if TYPE_CHECKING: + from arraycontext import ArrayContext + + from meshmode.discretization import Discretization, ElementGroupFactory + from meshmode.discretization.connection.direct import DirectDiscretizationConnection + from meshmode.mesh import BoundaryTag, Mesh + + logger = logging.getLogger(__name__) diff --git a/meshmode/discretization/connection/modal.py b/meshmode/discretization/connection/modal.py index 3b4f80e3..ac94c369 100644 --- a/meshmode/discretization/connection/modal.py +++ b/meshmode/discretization/connection/modal.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2021 University of Illinois Board of Trustees """ diff --git a/meshmode/discretization/connection/opposite_face.py b/meshmode/discretization/connection/opposite_face.py index 7db8b9e0..6917c776 100644 --- a/meshmode/discretization/connection/opposite_face.py +++ b/meshmode/discretization/connection/opposite_face.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ diff --git a/meshmode/discretization/connection/projection.py b/meshmode/discretization/connection/projection.py index 7e87c1b7..46422f17 100644 --- a/meshmode/discretization/connection/projection.py +++ b/meshmode/discretization/connection/projection.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """Copyright (C) 2018 Alexandru Fikl""" __license__ = """ diff --git a/meshmode/discretization/connection/refinement.py b/meshmode/discretization/connection/refinement.py index f8ded63c..50c1dc37 100644 --- a/meshmode/discretization/connection/refinement.py +++ b/meshmode/discretization/connection/refinement.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2016 Matt Wala" __license__ = """ diff --git a/meshmode/discretization/connection/same_mesh.py b/meshmode/discretization/connection/same_mesh.py index 7583ed22..b929f99b 100644 --- a/meshmode/discretization/connection/same_mesh.py +++ b/meshmode/discretization/connection/same_mesh.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ diff --git a/meshmode/discretization/poly_element.py b/meshmode/discretization/poly_element.py index 5555495a..ae8ec036 100644 --- a/meshmode/discretization/poly_element.py +++ b/meshmode/discretization/poly_element.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2013-2021 Andreas Kloeckner Copyright (C) 2021 University of Illinois Board of Trustees @@ -654,8 +657,8 @@ class HomogeneousOrderBasedGroupFactory(ElementGroupFactory): .. automethod:: __call__ """ - mesh_group_class: ClassVar[_MeshElementGroup] - group_class: ClassVar[ElementGroupBase] + mesh_group_class: ClassVar[type[_MeshElementGroup]] + group_class: ClassVar[type[ElementGroupBase]] def __init__(self, order: int) -> None: """ diff --git a/meshmode/discretization/visualization.py b/meshmode/discretization/visualization.py index 81da3964..aa042e3c 100644 --- a/meshmode/discretization/visualization.py +++ b/meshmode/discretization/visualization.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2014 Andreas Kloeckner Copyright (C) 2020 Alexandru Fikl diff --git a/meshmode/distributed.py b/meshmode/distributed.py index 6de36eaf..7c264d97 100644 --- a/meshmode/distributed.py +++ b/meshmode/distributed.py @@ -9,6 +9,8 @@ .. autoclass:: RemoteGroupInfo .. autoclass:: make_remote_group_infos """ +from __future__ import annotations + __copyright__ = """ Copyright (C) 2017 Ellis Hoag @@ -35,17 +37,12 @@ THE SOFTWARE. """ -from collections.abc import Hashable, Mapping, Sequence from dataclasses import dataclass from typing import TYPE_CHECKING, Any, cast from warnings import warn import numpy as np -from arraycontext import ArrayContext - -from meshmode.discretization import ElementGroupFactory -from meshmode.discretization.connection import DirectDiscretizationConnection from meshmode.mesh import InteriorAdjacencyGroup, InterPartAdjacencyGroup, Mesh, PartID @@ -54,8 +51,15 @@ if TYPE_CHECKING: + from collections.abc import Hashable, Mapping, Sequence + import mpi4py.MPI + from arraycontext import ArrayContext + + from meshmode.discretization import ElementGroupFactory + from meshmode.discretization.connection import DirectDiscretizationConnection + import logging @@ -236,7 +240,7 @@ class MPIBoundaryCommSetupHelper: .. automethod:: complete_some """ def __init__(self, - mpi_comm: "mpi4py.MPI.Intracomm", + mpi_comm: mpi4py.MPI.Intracomm, actx: ArrayContext, inter_rank_bdry_info: ( # new-timey @@ -276,7 +280,7 @@ def __init__(self, # }}} self.inter_rank_bdry_info = cast( - Sequence[InterRankBoundaryInfo], inter_rank_bdry_info) + "Sequence[InterRankBoundaryInfo]", inter_rank_bdry_info) self.bdry_grp_factory = bdry_grp_factory @@ -462,7 +466,7 @@ def membership_list_to_map( # FIXME: Move somewhere else, since it's not strictly limited to distributed? -def get_connected_parts(mesh: Mesh) -> "Sequence[PartID]": +def get_connected_parts(mesh: Mesh) -> Sequence[PartID]: """For a local mesh part in *mesh*, determine the set of connected parts.""" assert mesh.facial_adjacency_groups is not None @@ -475,7 +479,7 @@ def get_connected_parts(mesh: Mesh) -> "Sequence[PartID]": if isinstance(grp, InterPartAdjacencyGroup))) -def get_connected_partitions(mesh: Mesh) -> "Sequence[PartID]": +def get_connected_partitions(mesh: Mesh) -> Sequence[PartID]: warn( "get_connected_partitions is deprecated and will stop working in June 2023. " "Use get_connected_parts instead.", DeprecationWarning, stacklevel=2) diff --git a/meshmode/dof_array.py b/meshmode/dof_array.py index fbcc7adb..b9d393ff 100644 --- a/meshmode/dof_array.py +++ b/meshmode/dof_array.py @@ -25,14 +25,14 @@ import operator as op import threading -from collections.abc import Callable, Iterable from contextlib import contextmanager from functools import partial, update_wrapper from numbers import Number -from typing import Any, TypeAlias, Union +from typing import TYPE_CHECKING, Any, ClassVar, TypeAlias from warnings import warn import numpy as np +from typing_extensions import override from arraycontext import ( Array, @@ -50,6 +50,10 @@ from pytools import MovedFunctionDeprecationWrapper, single_valued +if TYPE_CHECKING: + from collections.abc import Callable, Iterable, Sequence + + __doc__ = """ .. autoclass:: DOFArray @@ -69,7 +73,7 @@ # {{{ DOFArray -ArithType: TypeAlias = Union["DOFArray", int, float, complex, np.generic] +ArithType: TypeAlias = "DOFArray | int | float | complex | np.generic" @with_container_arithmetic( @@ -143,6 +147,9 @@ class DOFArray: the array context given to :func:`array_context_for_pickling`. """ + _array_context: ArrayContext | None + _data: Sequence[Array] + def __init__(self, actx: ArrayContext | None, data: tuple[Any, ...]) -> None: if __debug__: if not (actx is None or isinstance(actx, ArrayContext)): @@ -155,10 +162,10 @@ def __init__(self, actx: ArrayContext | None, data: tuple[Any, ...]) -> None: self._data = data # Tell numpy that we would like to do our own array math, thank you very much. - __array_ufunc__ = None + __array_ufunc__: ClassVar[None] = None @property - def array_context(self) -> ArrayContext: + def array_context(self) -> ArrayContext | None: return self._array_context @property @@ -166,7 +173,10 @@ def entry_dtype(self) -> np.dtype: return single_valued(subary.dtype for subary in self._data) @classmethod - def from_list(cls, actx: ArrayContext | None, res_list) -> DOFArray: + def from_list(cls, + actx: ArrayContext | None, + res_list: Sequence[Array] + ) -> DOFArray: r"""Create a :class:`DOFArray` from a list of arrays (one per :class:`~meshmode.discretization.ElementGroupBase`). @@ -181,9 +191,11 @@ def from_list(cls, actx: ArrayContext | None, res_list) -> DOFArray: return cls(actx, tuple(res_list)) + @override def __str__(self) -> str: return f"DOFArray({self._data})" + @override def __repr__(self) -> str: return f"DOFArray({self._data!r})" @@ -197,7 +209,7 @@ def __bool__(self): def __len__(self): return len(self._data) - def __getitem__(self, i): + def __getitem__(self, i: int): return self._data[i] def __iter__(self): @@ -293,6 +305,7 @@ def __getstate__(self): # Make sure metadata inference has been done # https://github.com/inducer/meshmode/pull/318#issuecomment-1088320970 + assert self.array_context ary = self.array_context.thaw(self.array_context.freeze(self)) if self.array_context is not actx: @@ -378,6 +391,7 @@ def _deserialize_init_arrays_code(cls, template_instance_name, args): # {{{ type stubs for arithmetic, will be replaced by @with_container_arithmetic + def __pos__(self) -> DOFArray: ... def __neg__(self) -> DOFArray: ... def __abs__(self) -> DOFArray: ... def __add__(self, other: ArithType) -> DOFArray: ... diff --git a/meshmode/interop/__init__.py b/meshmode/interop/__init__.py index ba465860..07c28155 100644 --- a/meshmode/interop/__init__.py +++ b/meshmode/interop/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2020 Benjamin Sepanski" __license__ = """ diff --git a/meshmode/interop/firedrake/__init__.py b/meshmode/interop/firedrake/__init__.py index 464d9907..48ddb431 100644 --- a/meshmode/interop/firedrake/__init__.py +++ b/meshmode/interop/firedrake/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2020 Benjamin Sepanski" __license__ = """ diff --git a/meshmode/interop/firedrake/connection.py b/meshmode/interop/firedrake/connection.py index 828434fc..f24c93aa 100644 --- a/meshmode/interop/firedrake/connection.py +++ b/meshmode/interop/firedrake/connection.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2020 Benjamin Sepanski" __license__ = """ diff --git a/meshmode/interop/firedrake/mesh.py b/meshmode/interop/firedrake/mesh.py index b857db08..4922b1f1 100644 --- a/meshmode/interop/firedrake/mesh.py +++ b/meshmode/interop/firedrake/mesh.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2020 Benjamin Sepanski" __license__ = """ diff --git a/meshmode/interop/firedrake/reference_cell.py b/meshmode/interop/firedrake/reference_cell.py index aa25f1ce..1b9fc825 100644 --- a/meshmode/interop/firedrake/reference_cell.py +++ b/meshmode/interop/firedrake/reference_cell.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2020 Benjamin Sepanski" __license__ = """ diff --git a/meshmode/interop/nodal_dg.py b/meshmode/interop/nodal_dg.py index ff07844a..cd81934a 100644 --- a/meshmode/interop/nodal_dg.py +++ b/meshmode/interop/nodal_dg.py @@ -7,6 +7,8 @@ .. autofunction:: download_nodal_dg_if_not_present """ +from __future__ import annotations + __copyright__ = "Copyright (C) 2020 Andreas Kloeckner" @@ -31,15 +33,19 @@ """ -import numpy as np +from typing import TYPE_CHECKING -import arraycontext +import numpy as np import meshmode.discretization import meshmode.dof_array import meshmode.mesh +if TYPE_CHECKING: + import arraycontext + + class NodalDGContext: """Should be used as a context manager to ensure proper cleanup. diff --git a/meshmode/mesh/__init__.py b/meshmode/mesh/__init__.py index 8f57ab47..9aa3566d 100644 --- a/meshmode/mesh/__init__.py +++ b/meshmode/mesh/__init__.py @@ -73,6 +73,14 @@ Predefined Boundary tags ------------------------ +.. class:: BoundaryTag + + A type alias of :class:`typing.Hashable`. + +.. class:: PartID + + A type alias of :class:`typing.Hashable`. + .. autoclass:: BTAG_NONE .. autoclass:: BTAG_ALL .. autoclass:: BTAG_REALLY_ALL diff --git a/meshmode/mesh/generation.py b/meshmode/mesh/generation.py index 76e44efb..dcf2848f 100644 --- a/meshmode/mesh/generation.py +++ b/meshmode/mesh/generation.py @@ -1,4 +1,6 @@ # mypy: disallow-untyped-defs +from __future__ import annotations + __copyright__ = "Copyright (C) 2013 Andreas Kloeckner" @@ -23,8 +25,7 @@ """ import logging -from collections.abc import Callable, Sequence -from typing import Any +from typing import TYPE_CHECKING, Any import numpy as np import numpy.linalg as la @@ -33,7 +34,12 @@ from pytools import deprecate_keyword, log_process from meshmode.mesh import Mesh, MeshElementGroup, make_mesh -from meshmode.mesh.refinement import Refiner + + +if TYPE_CHECKING: + from collections.abc import Callable, Sequence + + from meshmode.mesh.refinement import Refiner logger = logging.getLogger(__name__) @@ -311,7 +317,7 @@ def __init__(self, coeffs: np.ndarray, phase: float = 0.0) -> None: self.phase = phase @staticmethod - def random(ncoeffs: int, seed: int) -> "WobblyCircle": + def random(ncoeffs: int, seed: int) -> WobblyCircle: rng = np.random.default_rng(seed) coeffs = rng.random(ncoeffs) @@ -349,7 +355,7 @@ def __init__(self, n_arms: int, amplitude: float, phase: float = 0.0) -> None: super().__init__(coeffs, phase=phase) @staticmethod - def random(seed: int) -> "NArmedStarfish": + def random(seed: int) -> NArmedStarfish: rng = np.random.default_rng(seed) # NOTE: 32 arms should be enough for everybody! diff --git a/meshmode/mesh/io.py b/meshmode/mesh/io.py index 25a8af22..1494d786 100644 --- a/meshmode/mesh/io.py +++ b/meshmode/mesh/io.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ @@ -20,8 +23,7 @@ THE SOFTWARE. """ -from collections.abc import MutableSequence, Sequence -from typing import Any, Literal, overload +from typing import TYPE_CHECKING, Any, Literal, overload import numpy as np from numpy.typing import NDArray @@ -37,9 +39,14 @@ ScriptSource, ScriptWithFilesSource, ) -from modepy import Shape -from meshmode.mesh import Mesh, MeshElementGroup + +if TYPE_CHECKING: + from collections.abc import MutableSequence, Sequence + + from modepy import Shape + + from meshmode.mesh import Mesh, MeshElementGroup __doc__ = """ @@ -377,6 +384,7 @@ def generate_gmsh(source, dimensions=None, order=None, other_options=None, other_options=other_options, extension=extension, gmsh_executable=gmsh_executable, target_unit=target_unit) as runner: + assert runner.output_file parse_gmsh(recv, runner.output_file, force_dimension=force_ambient_dim) diff --git a/meshmode/mesh/processing.py b/meshmode/mesh/processing.py index 1698665b..7ed216de 100644 --- a/meshmode/mesh/processing.py +++ b/meshmode/mesh/processing.py @@ -1,4 +1,6 @@ # mypy: disallow-untyped-defs +from __future__ import annotations + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" @@ -22,10 +24,9 @@ THE SOFTWARE. """ -from collections.abc import Callable, Mapping, Sequence from dataclasses import dataclass, replace from functools import reduce -from typing import Literal +from typing import TYPE_CHECKING, Literal from warnings import warn import numpy as np @@ -49,6 +50,10 @@ from meshmode.mesh.tools import AffineMap, find_point_to_point_mapping +if TYPE_CHECKING: + from collections.abc import Callable, Mapping, Sequence + + __doc__ = """ .. autoclass:: BoundaryPairMapping diff --git a/meshmode/mesh/refinement/__init__.py b/meshmode/mesh/refinement/__init__.py index e4bce613..45325c93 100644 --- a/meshmode/mesh/refinement/__init__.py +++ b/meshmode/mesh/refinement/__init__.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014-6 Shivam Gupta" __license__ = """ diff --git a/meshmode/mesh/refinement/no_adjacency.py b/meshmode/mesh/refinement/no_adjacency.py index bc171113..128038ff 100644 --- a/meshmode/mesh/refinement/no_adjacency.py +++ b/meshmode/mesh/refinement/no_adjacency.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2018 Andreas Kloeckner Copyright (C) 2014-6 Shivam Gupta diff --git a/meshmode/mesh/refinement/tessellate.py b/meshmode/mesh/refinement/tessellate.py index c4121e34..209d0993 100644 --- a/meshmode/mesh/refinement/tessellate.py +++ b/meshmode/mesh/refinement/tessellate.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2018 Andreas Kloeckner Copyright (C) 2014-6 Shivam Gupta diff --git a/meshmode/mesh/refinement/utils.py b/meshmode/mesh/refinement/utils.py index 8dcb3ce8..dc9c1e89 100644 --- a/meshmode/mesh/refinement/utils.py +++ b/meshmode/mesh/refinement/utils.py @@ -1,4 +1,6 @@ # mypy: disallow-untyped-defs +from __future__ import annotations + __copyright__ = "Copyright (C) 2014-6 Shivam Gupta, Andreas Kloeckner" diff --git a/meshmode/mesh/tools.py b/meshmode/mesh/tools.py index fc44dc23..9dd09396 100644 --- a/meshmode/mesh/tools.py +++ b/meshmode/mesh/tools.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2010,2012,2013 Andreas Kloeckner, Michael Tom" __license__ = """ diff --git a/meshmode/mesh/visualization.py b/meshmode/mesh/visualization.py index 24dfb257..98c990ad 100644 --- a/meshmode/mesh/visualization.py +++ b/meshmode/mesh/visualization.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ @@ -20,13 +23,15 @@ THE SOFTWARE. """ -from typing import Any +from typing import TYPE_CHECKING, Any import numpy as np -from arraycontext import ArrayContext -from meshmode.mesh import Mesh +if TYPE_CHECKING: + from arraycontext import ArrayContext + + from meshmode.mesh import Mesh __doc__ = """ diff --git a/meshmode/transform_metadata.py b/meshmode/transform_metadata.py index a352aecc..60031655 100644 --- a/meshmode/transform_metadata.py +++ b/meshmode/transform_metadata.py @@ -9,6 +9,8 @@ .. autoclass:: DiscretizationAmbientDimAxisTag .. autoclass:: DiscretizationTopologicalDimAxisTag """ +from __future__ import annotations + __copyright__ = """ Copyright (C) 2020-1 University of Illinois Board of Trustees diff --git a/meshmode/version.py b/meshmode/version.py index 19ec52d0..67dd05f2 100644 --- a/meshmode/version.py +++ b/meshmode/version.py @@ -1,3 +1,5 @@ +from __future__ import annotations + from importlib import metadata diff --git a/pyproject.toml b/pyproject.toml index b7263259..cb901503 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -36,6 +36,7 @@ dependencies = [ "pymbolic>=2022.2", "pytools>=2024.1.17", "recursivenodes", + "typing_extensions>=4.4", ] [project.optional-dependencies] @@ -45,7 +46,6 @@ doc = [ "sphinx-copybutton", ] test = [ - "mypy", "pylint", "pytest", "ruff", @@ -59,6 +59,15 @@ visualization = [ Documentation = "https://documen.tician.de/meshmode" Repository = "https://github.com/inducer/meshmode" +[tool.hatch.build.targets.sdist] +exclude = [ + "/.git*", + "/doc/_build", + "/.editorconfig", + "/run-*.sh", + "/.basedpyright", +] + [tool.ruff] preview = true @@ -76,6 +85,7 @@ extend-select = [ "RUF", # ruff "UP", # pyupgrade "W", # pycodestyle + "TC", ] extend-ignore = [ "C90", # McCabe complexity @@ -116,6 +126,11 @@ known-local-folder = [ "meshmode", ] lines-after-imports = 2 +required-imports = ["from __future__ import annotations"] + +[tool.ruff.lint.per-file-ignores] +"examples/*.py" = ["I002"] +"doc/conf.py" = ["I002"] [tool.pytest.ini_options] markers = [ @@ -123,53 +138,91 @@ markers = [ "octave: test requires Octave", ] -[tool.mypy] -python_version = "3.10" -warn_unused_ignores = true - -[[tool.mypy.overrides]] -module = [ - "meshmode.discretization.*", - "meshmode.dof_array.*", - "meshmode.interop.*", - "meshmode.mesh.visualization", - "meshmode.mesh.generation", - "meshmode.mesh.refinement.utils", - "meshmode.mesh.refinement.tessellate", -] -ignore_errors = true - -[[tool.mypy.overrides]] -module = [ - "FIAT.*", - "finat.*", - "firedrake.*", - "gmsh_interop.*", - "h5py.*", - "loopy.*", - "matplotlib.*", - "mayavi.*", - "mpl_toolkits.*", - "oct2py.*", - "pymbolic.*", - "pymetis.*", - "pyop2.*", - "pyopencl.*", - "pytential.*", - "pyvisfile.*", - "recursivenodes.*", - "scipy.*", -] -ignore_missing_imports = true - - [tool.typos.default] extend-ignore-re = [ "(?Rm)^.*(#|//)\\s*spellchecker:\\s*disable-line$" ] [tool.typos.default.extend-words] +# as in pt_typ, an import only used for type checking +"typ" = "typ" + "PN" = "PN" "nd" = "nd" # TODO: needed by deprecated MPIMeshDistributor.is_mananger_rank "mananger" = "mananger" + +[tool.basedpyright] +reportImplicitStringConcatenation = "none" +reportUnnecessaryIsInstance = "none" +reportUnusedCallResult = "none" +reportExplicitAny = "none" +reportUnusedParameter = "hint" + +reportPrivateUsage = "hint" +reportAny = "none" +reportUnreachable = "hint" + +# This reports even cycles that are qualified by 'if TYPE_CHECKING'. Not what +# we care about at this moment. +# https://github.com/microsoft/pyright/issues/746 +reportImportCycles = "none" + +ignore = [ + "doc/conf.py", +] + +pythonVersion = "3.10" +pythonPlatform = "All" + +[[tool.basedpyright.executionEnvironments]] +root = "test" +reportArgumentType = "hint" +reportAttributeAccessIssue = "hint" +reportMissingImports = "none" +reportMissingParameterType = "none" +reportMissingTypeStubs = "none" +reportUnknownArgumentType = "none" +reportUnknownMemberType = "hint" +reportUnknownParameterType = "none" +reportUnknownVariableType = "none" +reportUnknownLambdaType = "hint" +reportOperatorIssue = "hint" +reportPossiblyUnboundVariable = "hint" +reportPrivateUsage = "none" +reportUnusedImport = "hint" + + +[[tool.basedpyright.executionEnvironments]] +root = "examples" +reportArgumentType = "hint" +reportAttributeAccessIssue = "hint" +reportMissingImports = "none" +reportMissingParameterType = "none" +reportMissingTypeStubs = "none" +reportUnknownArgumentType = "none" +reportUnknownMemberType = "hint" +reportUnknownParameterType = "none" +reportUnknownVariableType = "none" +reportUnknownLambdaType = "hint" +reportOperatorIssue = "hint" +reportPossiblyUnboundVariable = "hint" +reportPrivateUsage = "none" + +reportGeneralTypeIssues = "hint" + +[[tool.basedpyright.executionEnvironments]] +root = "meshmode/interop/firedrake" +reportMissingImports = "none" +reportCallIssue = "hint" +reportArgumentType = "hint" + +[[tool.basedpyright.executionEnvironments]] +root = "meshmode/interop/nodal_dg.py" +reportMissingImports = "none" +reportOptionalMemberAccess = "none" +reportOptionalSubscript = "none" + +[[tool.basedpyright.executionEnvironments]] +root = "meshmode/discretization/visualization.py" +reportMissingImports = "none" diff --git a/run-mypy.sh b/run-mypy.sh deleted file mode 100755 index f1cc0920..00000000 --- a/run-mypy.sh +++ /dev/null @@ -1,3 +0,0 @@ -#!/bin/bash - -python -m mypy meshmode examples test diff --git a/test/test_array.py b/test/test_array.py index ed5e0684..7768d409 100644 --- a/test/test_array.py +++ b/test/test_array.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2020 Andreas Kloeckner" __license__ = """ @@ -27,6 +30,7 @@ import pytest from arraycontext import ( + ArrayContextFactory, dataclass_array_container, flatten, pytest_generate_tests_for_array_contexts, @@ -99,7 +103,7 @@ def _get_test_containers(actx, ambient_dim=2): @pytest.mark.parametrize("ord", [2, np.inf]) -def test_container_norm(actx_factory, ord): +def test_container_norm(actx_factory: ArrayContextFactory, ord): actx = actx_factory() c_test = _get_test_containers(actx) @@ -133,7 +137,7 @@ def test_container_norm(actx_factory, ord): # {{{ test_dof_array_pickling -def test_dof_array_pickling(actx_factory): +def test_dof_array_pickling(actx_factory: ArrayContextFactory): actx = actx_factory() _, _, mat_of_dofs, dc_of_dofs = _get_test_containers(actx) @@ -160,7 +164,7 @@ class FooAxisTag2(Tag): pass -def test_dof_array_pickling_tags(actx_factory): +def test_dof_array_pickling_tags(actx_factory: ArrayContextFactory): actx = actx_factory() from pickle import dumps, loads diff --git a/test/test_chained.py b/test/test_chained.py index 45b36620..5c42ba2a 100644 --- a/test/test_chained.py +++ b/test/test_chained.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2018 Alexandru Fikl" __license__ = """ @@ -25,7 +28,11 @@ import numpy as np import pytest -from arraycontext import flatten, pytest_generate_tests_for_array_contexts +from arraycontext import ( + ArrayContextFactory, + flatten, + pytest_generate_tests_for_array_contexts, +) from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory @@ -121,7 +128,7 @@ def create_face_connection(actx, discr): @pytest.mark.skip(reason="implementation detail") @pytest.mark.parametrize("ndim", [2, 3]) -def test_chained_batch_table(actx_factory, ndim, visualize=False): +def test_chained_batch_table(actx_factory: ArrayContextFactory, ndim, visualize=False): from meshmode.discretization.connection.chained import _build_element_lookup_table actx = actx_factory() @@ -149,7 +156,10 @@ def test_chained_batch_table(actx_factory, ndim, visualize=False): @pytest.mark.skip(reason="implementation detail") @pytest.mark.parametrize("ndim", [2, 3]) -def test_chained_new_group_table(actx_factory, ndim, visualize=False): +def test_chained_new_group_table( + actx_factory: ArrayContextFactory, + ndim: int, + visualize: bool = False): from meshmode.discretization.connection.chained import _build_new_group_table actx = actx_factory() @@ -195,7 +205,7 @@ def test_chained_new_group_table(actx_factory, ndim, visualize=False): @pytest.mark.parametrize("ndim", [2, 3]) -def test_chained_connection(actx_factory, ndim, visualize=False): +def test_chained_connection(actx_factory: ArrayContextFactory, ndim, visualize=False): actx = actx_factory() discr = create_discretization(actx, ndim, nelements=10) @@ -221,7 +231,10 @@ def f(x): @pytest.mark.parametrize("ndim", [2, 3]) -def test_chained_full_resample_matrix(actx_factory, ndim, visualize=False): +def test_chained_full_resample_matrix( + actx_factory: ArrayContextFactory, + ndim, + visualize=False): from meshmode.discretization.connection.chained import make_full_resample_matrix actx = actx_factory() @@ -254,7 +267,7 @@ def f(x): @pytest.mark.parametrize(("ndim", "chain_type"), [ (2, 1), (2, 2), (3, 1), (3, 3)]) -def test_chained_to_direct(actx_factory, ndim, chain_type, +def test_chained_to_direct(actx_factory: ArrayContextFactory, ndim, chain_type, nelements=128, visualize=False): import time @@ -338,7 +351,10 @@ def f(x): @pytest.mark.parametrize(("ndim", "mesh_name"), [ (2, "starfish"), (3, "torus")]) -def test_reversed_chained_connection(actx_factory, ndim, mesh_name): +def test_reversed_chained_connection( + actx_factory: ArrayContextFactory, + ndim, + mesh_name): actx = actx_factory() def run(nelements, order): diff --git a/test/test_connection.py b/test/test_connection.py index 08ee8a4e..1d3f3b74 100644 --- a/test/test_connection.py +++ b/test/test_connection.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2020 Andreas Kloeckner" __license__ = """ @@ -25,7 +28,7 @@ import pytest -from arraycontext import pytest_generate_tests_for_array_contexts +from arraycontext import ArrayContextFactory, pytest_generate_tests_for_array_contexts import meshmode.mesh.generation as mgen from meshmode import _acf # noqa: F401 @@ -55,7 +58,11 @@ ]) @pytest.mark.parametrize("dim", [2, 3]) @pytest.mark.parametrize("order", [1, 2, 3, 4, 5]) -def test_bdry_restriction_is_permutation(actx_factory, group_factory, dim, order): +def test_bdry_restriction_is_permutation( + actx_factory: ArrayContextFactory, + group_factory, + dim, + order): """Check that restriction to the boundary and opposite-face swap for the element groups, orders and dimensions above is actually just indirect access. diff --git a/test/test_discretization.py b/test/test_discretization.py index 8c4361c3..8326cc8b 100644 --- a/test/test_discretization.py +++ b/test/test_discretization.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2021 Andreas Kloeckner" __license__ = """ @@ -22,7 +25,7 @@ import numpy as np -from arraycontext import pytest_generate_tests_for_array_contexts +from arraycontext import ArrayContextFactory, pytest_generate_tests_for_array_contexts import meshmode.mesh.generation as mgen from meshmode import _acf # noqa: F401 @@ -37,7 +40,7 @@ [PytestPyOpenCLArrayContextFactory]) -def test_discr_nodes_caching(actx_factory): +def test_discr_nodes_caching(actx_factory: ArrayContextFactory): actx = actx_factory() nelements = 30 target_order = 5 diff --git a/test/test_firedrake_interop.py b/test/test_firedrake_interop.py index bd5ba3fe..774e8674 100644 --- a/test/test_firedrake_interop.py +++ b/test/test_firedrake_interop.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2020 Benjamin Sepanski" __license__ = """ @@ -25,7 +28,7 @@ import numpy as np import pytest -from arraycontext import pytest_generate_tests_for_array_contexts +from arraycontext import ArrayContextFactory, pytest_generate_tests_for_array_contexts from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory @@ -173,7 +176,10 @@ def check_consistency(fdrake_fspace, discr, group_nr=0): assert discr.ndofs == fdrake_fspace.node_count -def test_from_fd_consistency(actx_factory, fdrake_mesh, fspace_degree): +def test_from_fd_consistency( + actx_factory: ArrayContextFactory, + fdrake_mesh, + fspace_degree): """ Check basic consistency with a FiredrakeConnection built from firedrake """ @@ -192,7 +198,7 @@ def test_from_fd_consistency(actx_factory, fdrake_mesh, fspace_degree): check_consistency(fdrake_fspace, discr) -def test_to_fd_consistency(actx_factory, mm_mesh, fspace_degree): +def test_to_fd_consistency(actx_factory: ArrayContextFactory, mm_mesh, fspace_degree): pytest.importorskip("firedrake") actx = actx_factory() @@ -211,7 +217,7 @@ def test_to_fd_consistency(actx_factory, mm_mesh, fspace_degree): # {{{ Now check the FiredrakeConnection consistency when restricted to bdy -def test_from_boundary_consistency(actx_factory, +def test_from_boundary_consistency(actx_factory: ArrayContextFactory, fdrake_mesh, fspace_degree): """ @@ -401,7 +407,7 @@ def test_bdy_tags(mesh_name, bdy_ids, coord_indices, coord_values, ("warp", [10, 20, 30], 3), ]) @pytest.mark.parametrize("only_convert_bdy", [False, True]) -def test_from_fd_transfer(actx_factory, fspace_degree, +def test_from_fd_transfer(actx_factory: ArrayContextFactory, fspace_degree, fdrake_mesh_name, fdrake_mesh_pars, dim, only_convert_bdy): """ @@ -526,7 +532,12 @@ def get_fdrake_mesh_and_h_from_par(mesh_par): ("warp", [10, 20, 30], 2), ("warp", [10, 20, 30], 3), ]) -def test_to_fd_transfer(actx_factory, fspace_degree, mesh_name, mesh_pars, dim): +def test_to_fd_transfer( + actx_factory: ArrayContextFactory, + fspace_degree, + mesh_name, + mesh_pars, + dim): """ Make sure creating a function which projects onto one dimension then transports it is the same @@ -600,7 +611,7 @@ def test_to_fd_transfer(actx_factory, fspace_degree, mesh_name, mesh_pars, dim): @pytest.mark.parametrize("fspace_type", ("scalar", "vector", "tensor")) @pytest.mark.parametrize("only_convert_bdy", (False, True)) -def test_from_fd_idempotency(actx_factory, +def test_from_fd_idempotency(actx_factory: ArrayContextFactory, fdrake_mesh, fspace_degree, fspace_type, only_convert_bdy): """ @@ -678,7 +689,7 @@ def test_from_fd_idempotency(actx_factory, atol=CLOSE_ATOL) -def test_to_fd_idempotency(actx_factory, mm_mesh, fspace_degree): +def test_to_fd_idempotency(actx_factory: ArrayContextFactory, mm_mesh, fspace_degree): """ Make sure mm->fd->mm and (mm->)->fd->mm->fd are identity """ diff --git a/test/test_interop.py b/test/test_interop.py index 22956941..1e9f3192 100644 --- a/test/test_interop.py +++ b/test/test_interop.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ @@ -25,7 +28,7 @@ import numpy as np import pytest -from arraycontext import pytest_generate_tests_for_array_contexts +from arraycontext import ArrayContextFactory, pytest_generate_tests_for_array_contexts from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory @@ -39,7 +42,7 @@ @pytest.mark.parametrize("dim", [1, 2, 3]) @pytest.mark.octave -def test_nodal_dg_interop(actx_factory, dim): +def test_nodal_dg_interop(actx_factory: ArrayContextFactory, dim: int): pytest.importorskip("oct2py") actx = actx_factory() diff --git a/test/test_mesh.py b/test/test_mesh.py index 8b672f2e..30c522c5 100644 --- a/test/test_mesh.py +++ b/test/test_mesh.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2020 Andreas Kloeckner Copyright (C) 2021 University of Illinois Board of Trustees @@ -32,7 +35,7 @@ import numpy.linalg as la import pytest -from arraycontext import pytest_generate_tests_for_array_contexts +from arraycontext import ArrayContextFactory, pytest_generate_tests_for_array_contexts import meshmode.mesh.generation as mgen import meshmode.mesh.io as mio @@ -84,8 +87,11 @@ def _get_rotation(amount, axis, center=None): (2, "X"), (3, None), ]) -def test_nonequal_rect_mesh_generation(actx_factory, dim, mesh_type, - visualize=False): +def test_nonequal_rect_mesh_generation( + actx_factory: ArrayContextFactory, + dim, + mesh_type, + visualize=False): """Test that ``generate_regular_rect_mesh`` works with non-equal arguments across axes. """ @@ -119,7 +125,7 @@ def test_rect_mesh(visualize=False): pt.show() -def test_box_mesh(actx_factory, visualize=False): +def test_box_mesh(actx_factory: ArrayContextFactory, visualize=False): mesh = mgen.generate_box_mesh(3*(np.linspace(0, 1, 5),)) if visualize: @@ -531,7 +537,7 @@ def test_quad_single_element(visualize=False): SimplexElementGroup, TensorProductElementGroup ]) -def test_merge_and_map(actx_factory, group_cls, visualize=False): +def test_merge_and_map(actx_factory: ArrayContextFactory, group_cls, visualize=False): from meshmode.mesh.io import FileSource, generate_gmsh order = 3 @@ -1220,7 +1226,7 @@ def test_quad_mesh_3d(mesh_name, order=3, visualize=False): # {{{ test_cube_icosahedron @pytest.mark.parametrize("order", [2, 3]) -def test_cube_icosphere(actx_factory, order, visualize=False): +def test_cube_icosphere(actx_factory: ArrayContextFactory, order, visualize=False): mesh = mgen.generate_sphere( r=1.0, order=order, group_cls=TensorProductElementGroup, @@ -1243,7 +1249,7 @@ def test_cube_icosphere(actx_factory, order, visualize=False): @pytest.mark.parametrize("order", [3, 4]) @pytest.mark.parametrize("name", ["torus", "cruller"]) -def test_tensor_torus(actx_factory, order, name, visualize=False): +def test_tensor_torus(actx_factory: ArrayContextFactory, order, name, visualize=False): if name == "torus": func = mgen.generate_torus elif name == "cruller": @@ -1273,7 +1279,7 @@ def test_tensor_torus(actx_factory, order, name, visualize=False): # {{{ test_node_vertex_consistency_check -def test_node_vertex_consistency_check(actx_factory): +def test_node_vertex_consistency_check(actx_factory: ArrayContextFactory): actx = actx_factory() from meshmode import InconsistentVerticesError @@ -1551,7 +1557,11 @@ def test_glued_mesh_offset_only(): @pytest.mark.parametrize("mesh_name", ["starfish3", "dumbbell", "torus"]) @pytest.mark.parametrize("has_offset", [True, False]) -def test_mesh_grid(actx_factory, mesh_name, has_offset, visualize=False): +def test_mesh_grid( + actx_factory: ArrayContextFactory, + mesh_name, + has_offset, + visualize=False): target_order = 4 if mesh_name == "starfish3": diff --git a/test/test_meshmode.py b/test/test_meshmode.py index f264b646..58d08324 100644 --- a/test/test_meshmode.py +++ b/test/test_meshmode.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014 Andreas Kloeckner" __license__ = """ @@ -28,7 +31,11 @@ import numpy.linalg as la import pytest -from arraycontext import flatten, pytest_generate_tests_for_array_contexts +from arraycontext import ( + ArrayContextFactory, + flatten, + pytest_generate_tests_for_array_contexts, +) import meshmode.mesh.generation as mgen from meshmode import _acf # noqa: F401 @@ -106,8 +113,14 @@ def normalize_group_factory(dim, grp_factory): ("warp", 3, [10, 20, 30]), ]) @pytest.mark.parametrize("per_face_groups", [True, False]) -def test_boundary_interpolation(actx_factory, group_factory, boundary_tag, - mesh_name, dim, mesh_pars, per_face_groups): +def test_boundary_interpolation( + actx_factory: ArrayContextFactory, + group_factory, + boundary_tag, + mesh_name: str, + dim, + mesh_pars, + per_face_groups): if (group_factory is LegendreGaussLobattoTensorProductGroupFactory and mesh_name == "blob"): pytest.skip("tensor products not implemented on blobs") @@ -227,7 +240,7 @@ def f(x): ("warp", 3, [10, 20, 30]), ]) @pytest.mark.parametrize("per_face_groups", [False, True]) -def test_all_faces_interpolation(actx_factory, group_factory, +def test_all_faces_interpolation(actx_factory: ArrayContextFactory, group_factory, mesh_name, dim, mesh_pars, per_face_groups): if (group_factory is LegendreGaussLobattoTensorProductGroupFactory and mesh_name == "blob"): @@ -355,7 +368,7 @@ def f(x): ("periodic", 2, [3, 5, 7]), ("periodic", 3, [5, 7]) ]) -def test_opposite_face_interpolation(actx_factory, group_factory, +def test_opposite_face_interpolation(actx_factory: ArrayContextFactory, group_factory, mesh_name, dim, mesh_pars): if (group_factory is LegendreGaussLobattoTensorProductGroupFactory and mesh_name in ["segment", "blob", "periodic"]): @@ -483,7 +496,11 @@ def f(x): ("ball", lambda: mgen.generate_icosahedron(1, 1)), ("torus", lambda: mgen.generate_torus(5, 1)), ]) -def test_orientation_3d(actx_factory, what, mesh_gen_func, visualize=False): +def test_orientation_3d( + actx_factory: ArrayContextFactory, + what, + mesh_gen_func, + visualize=False): from arraycontext import PyOpenCLArrayContext pytest.importorskip("pytential") @@ -503,12 +520,14 @@ def test_orientation_3d(actx_factory, what, mesh_gen_func, visualize=False): from pytential import bind, sym + from pytools.obj_array import make_obj_array + # {{{ check normals point outward if what == "torus": nodes = sym.nodes(mesh.ambient_dim).as_vector() angle = sym.arctan2(nodes[1], nodes[0]) - center_nodes = sym.make_obj_array([ + center_nodes = make_obj_array([ 5*sym.cos(angle), 5*sym.sin(angle), 0*angle]) @@ -548,8 +567,12 @@ def test_orientation_3d(actx_factory, what, mesh_gen_func, visualize=False): SimplexElementGroup, TensorProductElementGroup, ]) -def test_sanity_single_element(actx_factory, dim, mesh_order, group_cls, - visualize=False): +def test_sanity_single_element( + actx_factory: ArrayContextFactory, + dim, + mesh_order, + group_cls, + visualize=False): from arraycontext import PyOpenCLArrayContext pytest.importorskip("pytential") actx = actx_factory() @@ -639,8 +662,12 @@ def test_sanity_single_element(actx_factory, dim, mesh_order, group_cls, SimplexElementGroup, TensorProductElementGroup, ]) -def test_sanity_no_elements(actx_factory, dim, mesh_order, group_cls, - visualize=False): +def test_sanity_no_elements( + actx_factory: ArrayContextFactory, + dim, + mesh_order, + group_cls, + visualize=False): from arraycontext import PyOpenCLArrayContext pytest.importorskip("pytential") actx = actx_factory() @@ -706,7 +733,7 @@ def test_sanity_no_elements(actx_factory, dim, mesh_order, group_cls, @pytest.mark.parametrize("dim", [2, 3, 4]) @pytest.mark.parametrize("order", [3]) -def test_sanity_qhull_nd(actx_factory, dim, order): +def test_sanity_qhull_nd(actx_factory: ArrayContextFactory, dim, order): pytest.importorskip("scipy") logging.basicConfig(level=logging.INFO) @@ -760,7 +787,12 @@ def f(x): ("ball-radius-1.step", 3), ]) @pytest.mark.parametrize("mesh_order", [1, 2]) -def test_sanity_balls(actx_factory, src_file, dim, mesh_order, visualize=False): +def test_sanity_balls( + actx_factory: ArrayContextFactory, + src_file, + dim, + mesh_order, + visualize=False): from arraycontext import PyOpenCLArrayContext pytest.importorskip("pytential") @@ -878,7 +910,7 @@ def test_sanity_balls(actx_factory, src_file, dim, mesh_order, visualize=False): # {{{ mesh without vertices -def test_mesh_without_vertices(actx_factory): +def test_mesh_without_vertices(actx_factory: ArrayContextFactory): actx = actx_factory() # create a mesh @@ -910,7 +942,10 @@ def test_mesh_without_vertices(actx_factory): # {{{ test_mesh_multiple_groups @pytest.mark.parametrize("ambient_dim", [1, 2, 3]) -def test_mesh_multiple_groups(actx_factory, ambient_dim, visualize=False): +def test_mesh_multiple_groups( + actx_factory: ArrayContextFactory, + ambient_dim, + visualize=False): actx = actx_factory() order = 4 @@ -1028,7 +1063,7 @@ def grp_factory(mesh_el_group: MeshElementGroup): @pytest.mark.parametrize("ambient_dim", [2, 3]) -def test_mesh_with_interior_unit_nodes(actx_factory, ambient_dim): +def test_mesh_with_interior_unit_nodes(actx_factory: ArrayContextFactory, ambient_dim): actx = actx_factory() # NOTE: smaller orders or coarser meshes make the cases fail the diff --git a/test/test_modal.py b/test/test_modal.py index c5e39f19..4703f064 100644 --- a/test/test_modal.py +++ b/test/test_modal.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2021 University of Illinois Board of Trustees" __license__ = """ @@ -26,7 +29,7 @@ import numpy as np import pytest -from arraycontext import pytest_generate_tests_for_array_contexts +from arraycontext import ArrayContextFactory, pytest_generate_tests_for_array_contexts import meshmode.mesh.generation as mgen from meshmode import _acf # noqa: F401 @@ -62,7 +65,9 @@ PolynomialEquidistantSimplexGroupFactory, LegendreGaussLobattoTensorProductGroupFactory, ]) -def test_inverse_modal_connections(actx_factory, nodal_group_factory): +def test_inverse_modal_connections( + actx_factory: ArrayContextFactory, + nodal_group_factory): if nodal_group_factory is LegendreGaussLobattoTensorProductGroupFactory: group_cls = TensorProductElementGroup @@ -112,7 +117,9 @@ def f(x): @pytest.mark.parametrize("quad_group_factory", [ QuadratureSimplexGroupFactory ]) -def test_modal_coefficients_by_projection(actx_factory, quad_group_factory): +def test_modal_coefficients_by_projection( + actx_factory: ArrayContextFactory, + quad_group_factory): group_cls = SimplexElementGroup modal_group_factory = ModalSimplexGroupFactory actx = actx_factory() @@ -172,7 +179,9 @@ def f(x): @pytest.mark.parametrize("quad_group_factory", [ QuadratureSimplexGroupFactory ]) -def test_quadrature_based_modal_connection_reverse(actx_factory, quad_group_factory): +def test_quadrature_based_modal_connection_reverse( + actx_factory: ArrayContextFactory, + quad_group_factory): group_cls = SimplexElementGroup modal_group_factory = ModalSimplexGroupFactory @@ -225,7 +234,7 @@ def f(x): (2, [10, 20, 30]), (3, [10, 20, 30]), ]) -def test_modal_truncation(actx_factory, nodal_group_factory, +def test_modal_truncation(actx_factory: ArrayContextFactory, nodal_group_factory, dim, mesh_pars): if nodal_group_factory == "warp_and_blend": diff --git a/test/test_partition.py b/test/test_partition.py index 7b33e766..fd9d6ab6 100644 --- a/test/test_partition.py +++ b/test/test_partition.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = """ Copyright (C) 2017 Ellis Hoag Copyright (C) 2017 Andreas Kloeckner @@ -30,7 +33,12 @@ import pytest import pyopencl as cl -from arraycontext import flatten, pytest_generate_tests_for_array_contexts, unflatten +from arraycontext import ( + ArrayContextFactory, + flatten, + pytest_generate_tests_for_array_contexts, + unflatten, +) from meshmode import _acf # noqa: F401 from meshmode.array_context import PytestPyOpenCLArrayContextFactory @@ -65,7 +73,7 @@ (2, [3, 4, 7]), (3, [3, 4]) ]) -def test_partition_interpolation(actx_factory, dim, mesh_pars, +def test_partition_interpolation(actx_factory: ArrayContextFactory, dim, mesh_pars, num_parts, num_groups, part_method): order = 4 rng = np.random.default_rng(seed=42) diff --git a/test/test_refinement.py b/test/test_refinement.py index f265d8c3..e7b83d22 100644 --- a/test/test_refinement.py +++ b/test/test_refinement.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2014-6 Shivam Gupta, Andreas Kloeckner" __license__ = """ @@ -27,7 +30,7 @@ import numpy as np import pytest -from arraycontext import pytest_generate_tests_for_array_contexts +from arraycontext import ArrayContextFactory, pytest_generate_tests_for_array_contexts import meshmode.mesh.generation as mgen from meshmode import _acf # noqa: F401 @@ -117,7 +120,7 @@ def uniform_refine_flags(mesh): ]) # test_refinement_connection(cl._csc, PolynomialWarpAndBlend2DRestrictingGroupFactory, 'warp', 2, [4, 5, 6], 5, partial(even_refine_flags, 2)) # noqa: E501 def test_refinement_connection( - actx_factory, group_factory, + actx_factory: ArrayContextFactory, group_factory, mesh_name, dim, mesh_pars, mesh_order, refine_flags, visualize=False): if group_factory == "warp_and_blend": @@ -279,7 +282,7 @@ def test_conformity_of_uniform_mesh(refinement_rounds): @pytest.mark.parametrize("mesh_name", ["torus", "icosphere", "cylinder"]) -def test_refine_surfaces(actx_factory, mesh_name, visualize=False): +def test_refine_surfaces(actx_factory: ArrayContextFactory, mesh_name, visualize=False): if mesh_name == "torus": mesh = mgen.generate_torus(10, 1, 40, 4, order=4) elif mesh_name == "icosphere": diff --git a/test/test_visualization.py b/test/test_visualization.py index 0cd0f8fb..0da89ec1 100644 --- a/test/test_visualization.py +++ b/test/test_visualization.py @@ -1,3 +1,6 @@ +from __future__ import annotations + + __copyright__ = "Copyright (C) 2020 Andreas Kloeckner" __license__ = """ @@ -28,7 +31,7 @@ import numpy as np import pytest -from arraycontext import pytest_generate_tests_for_array_contexts +from arraycontext import ArrayContextFactory, pytest_generate_tests_for_array_contexts from pytools.obj_array import make_obj_array import meshmode.mesh.generation as mgen @@ -52,7 +55,7 @@ # {{{ test visualizer @pytest.mark.parametrize("dim", [1, 2, 3]) -def test_parallel_vtk_file(actx_factory, dim): +def test_parallel_vtk_file(actx_factory: ArrayContextFactory, dim): r""" Simple test just generates a sample parallel PVTU file and checks it against the expected result. The expected @@ -122,7 +125,7 @@ class VisualizerData: (2, TensorProductElementGroup), (3, TensorProductElementGroup), ]) -def test_visualizers(actx_factory, dim, group_cls): +def test_visualizers(actx_factory: ArrayContextFactory, dim, group_cls): actx = actx_factory() nelements = 64 @@ -243,7 +246,10 @@ def test_visualizers(actx_factory, dim, group_cls): @pytest.mark.parametrize("ambient_dim", [2, 3]) -def test_copy_visualizer(actx_factory, ambient_dim, visualize=True): +def test_copy_visualizer( + actx_factory: ArrayContextFactory, + ambient_dim: int, + visualize=True): actx = actx_factory() target_order = 4 @@ -296,7 +302,7 @@ def test_copy_visualizer(actx_factory, ambient_dim, visualize=True): # {{{ test_vtk_overwrite -def test_vtk_overwrite(actx_factory): +def test_vtk_overwrite(actx_factory: ArrayContextFactory): pytest.importorskip("pyvisfile") def _try_write_vtk(writer, obj): @@ -343,7 +349,7 @@ def _try_write_vtk(writer, obj): # {{{ test_visualize_mesh_resampling_error -def test_visualize_mesh_resampling_error(actx_factory): +def test_visualize_mesh_resampling_error(actx_factory: ArrayContextFactory): actx = actx_factory() target_order = 4