H5CX__pop_common: Assertion `head && *head' failed error with install SpatialExperiment package #174
Description
Hi Developer,
I got the error with insatll the SpatialExperiment in R 4.2.3 in platform centos7.9.
The detail error lying below:
Installing package(s) 'SpatialExperiment'
trying URL 'https://bioconductor.org/packages/3.16/bioc/src/contrib/SpatialExperiment_1.8.1.tar.gz'
Content type 'application/gzip' length 5390680 bytes (5.1 MB)
downloaded 5.1 MB
- installing source package ‘SpatialExperiment’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
sh: line 1: 128116 Aborted (core dumped) R_TESTS= '/public/syssoft/R-4.2.3/lib64/R/bin/R' --no-save --no-restore --no-echo 2>&1 < '/tmp/Rtmp3zuIcX/file1f46e57fae751'
R: H5CX.c:3535: H5CX__pop_common: Assertion `head && *head' failed.
ERROR: lazy loading failed for package ‘SpatialExperiment’ - removing ‘/public/syssoft/R-4.2.3/lib64/R/library/SpatialExperiment’
The R info:
sessionInfo()
R version 4.2.3 (2023-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS: /public/syssoft/R-4.2.3/lib64/R/lib/libRblas.so
LAPACK: /public/syssoft/R-4.2.3/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] BiocManager_1.30.21.1 compiler_4.2.3 tools_4.2.3
Any advice would be appreciated,
Best,
hanhuihong