diff --git a/data/STRchive-loci.json b/data/STRchive-loci.json
index bf0c5861..772e644b 100644
--- a/data/STRchive-loci.json
+++ b/data/STRchive-loci.json
@@ -758,11 +758,11 @@
"disease_id": "SCA8",
"gene": "ATXN8OS",
"chrom": "chr13",
- "start_hg38": 70139383,
+ "start_hg38": 70139353,
"stop_hg38": 70139429,
- "start_hg19": 70713515,
+ "start_hg19": 70713485,
"stop_hg19": 70713561,
- "start_t2t": 69361243,
+ "start_t2t": 69361215,
"stop_t2t": 69361270,
"disease": "Spinocerebellar ataxia type 8",
"inheritance": ["AD"],
@@ -781,11 +781,11 @@
"year": "1999 [@pmid:10192387]",
"location_in_gene": "Coding Exon 1, or 3' UTR depending on transcript",
"gene_strand": "+",
- "reference_motif_reference_orientation": ["CTG"],
- "pathogenic_motif_reference_orientation": ["CTG"],
+ "reference_motif_reference_orientation": ["CTG", "CTA"],
+ "pathogenic_motif_reference_orientation": ["CTG", "CTA"],
"benign_motif_reference_orientation": [],
"unknown_motif_reference_orientation": [],
- "pathogenic_motif_gene_orientation": ["CTG"],
+ "pathogenic_motif_gene_orientation": ["CTG", "ACT"],
"benign_motif_gene_orientation": [],
"unknown_motif_gene_orientation": [],
"locus_structure": [
diff --git a/data/catalogs/STRchive-disease-loci.T2T-chm13.TRGT.bed b/data/catalogs/STRchive-disease-loci.T2T-chm13.TRGT.bed
index 192ac6d9..0d28165c 100644
--- a/data/catalogs/STRchive-disease-loci.T2T-chm13.TRGT.bed
+++ b/data/catalogs/STRchive-disease-loci.T2T-chm13.TRGT.bed
@@ -36,7 +36,7 @@ chr12 6947903 6947941 ID=DRPLA_ATN1;MOTIFS=CAG;STRUC=
chr12 50468095 50468118 ID=FRA12A_DIP2B;MOTIFS=GGC;STRUC=
chr12 111575873 111575940 ID=SCA2_ATXN2;MOTIFS=CTG;STRUC=
chr12 123532573 123532603 ID=OPDM4_RILPL1;MOTIFS=GGC;STRUC=
-chr13 69361213 69361270 ID=SCA8_ATXN8OS;MOTIFS=CTA,CTG;STRUC=
+chr13 69361185 69361270 ID=SCA8_ATXN8OS;MOTIFS=CTA,CTG;STRUC=
chr13 99196358 99196404 ID=HPE5_ZIC2;MOTIFS=GCN;STRUC=
chr13 101377549 101377792 ID=SCA27B_FGF14;MOTIFS=GAA,GAAGGA,GAAGAAGAAGAAGCA;STRUC=
chr14 17522488 17522519 ID=OPMD_PABPN1;MOTIFS=GCN;STRUC=
diff --git a/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed b/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed
index 86e42039..872256ab 100644
--- a/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed
+++ b/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed
@@ -42,8 +42,8 @@ chr12 6947903 6947941 CAG 3 DRPLA_ATN1
chr12 50468095 50468118 GGC 3 FRA12A_DIP2B
chr12 111575873 111575940 CTG 3 SCA2_ATXN2
chr12 123532573 123532603 GGC 3 OPDM4_RILPL1
-chr13 69361213 69361243 CTA 3 SCA8_ATXN8OS_flank
-chr13 69361243 69361270 CTG 3 SCA8_ATXN8OS
+chr13 69361185 69361215 CTA 3 SCA8_ATXN8OS_flank
+chr13 69361215 69361270 CTG 3 SCA8_ATXN8OS
chr13 99196358 99196404 GCN 3 HPE5_ZIC2
chr13 101377549 101377792 GAA 3 SCA27B_FGF14
chr14 17522488 17522519 GCN 3 OPMD_PABPN1
diff --git a/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed.gz b/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed.gz
index abee0b5a..fb7ba43f 100644
Binary files a/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed.gz and b/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed.gz differ
diff --git a/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed.gz.tbi b/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed.gz.tbi
index abae9bfb..00f5e297 100644
Binary files a/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed.gz.tbi and b/data/catalogs/STRchive-disease-loci.T2T-chm13.atarva.bed.gz.tbi differ
diff --git a/data/catalogs/STRchive-disease-loci.T2T-chm13.general.bed b/data/catalogs/STRchive-disease-loci.T2T-chm13.general.bed
index 49877b6f..4fef214d 100644
--- a/data/catalogs/STRchive-disease-loci.T2T-chm13.general.bed
+++ b/data/catalogs/STRchive-disease-loci.T2T-chm13.general.bed
@@ -37,7 +37,7 @@ chr12 6947903 6947941 DRPLA_ATN1 ATN1 CAG CAG 48 AD Dentatorubral-Pallidoluysian
chr12 50468095 50468118 FRA12A_DIP2B DIP2B GGC GGC 273 AD Intellectual developmental disorder, FRA12A type
chr12 111575873 111575940 SCA2_ATXN2 ATXN2 CTG CTG 35 AD,AR Spinocerebellar ataxia type 2
chr12 123532573 123532603 OPDM4_RILPL1 RILPL1 GGC GGC 120 AD Oculopharyngodistal myopathy type 4
-chr13 69361243 69361270 SCA8_ATXN8OS ATXN8OS CTG CTG 71 AD Spinocerebellar ataxia type 8
+chr13 69361215 69361270 SCA8_ATXN8OS ATXN8OS CTG,CTA CTG,CTA 71 AD Spinocerebellar ataxia type 8
chr13 99196358 99196404 HPE5_ZIC2 ZIC2 GCN GCN 25 AD Holoprosencephaly-5
chr13 101377549 101377792 SCA27B_FGF14 FGF14 GAA GAA 320 AD Spinocerebellar ataxia 27B
chr14 17522488 17522519 OPMD_PABPN1 PABPN1 GCN GCN 12 AD,AR Oculopharyngeal muscular dystrophy
diff --git a/data/catalogs/STRchive-disease-loci.T2T-chm13.longTR.bed b/data/catalogs/STRchive-disease-loci.T2T-chm13.longTR.bed
index c36c8a4d..83c15857 100644
--- a/data/catalogs/STRchive-disease-loci.T2T-chm13.longTR.bed
+++ b/data/catalogs/STRchive-disease-loci.T2T-chm13.longTR.bed
@@ -36,7 +36,7 @@ chr12 6947904 6947941 CAG DRPLA_ATN1
chr12 50468096 50468118 GGC FRA12A_DIP2B
chr12 111575874 111575940 CTG SCA2_ATXN2
chr12 123532574 123532603 GGC OPDM4_RILPL1
-chr13 69361244 69361270 CTG SCA8_ATXN8OS
+chr13 69361216 69361270 CTG,CTA SCA8_ATXN8OS
chr13 99196359 99196404 GCN HPE5_ZIC2
chr13 101377550 101377792 GAA,GAAGGA,GAAGAAGAAGAAGCA SCA27B_FGF14
chr14 17522489 17522519 GCN OPMD_PABPN1
diff --git a/data/catalogs/STRchive-disease-loci.T2T-chm13.straglr.bed b/data/catalogs/STRchive-disease-loci.T2T-chm13.straglr.bed
index 2f601147..a9aa61f5 100644
--- a/data/catalogs/STRchive-disease-loci.T2T-chm13.straglr.bed
+++ b/data/catalogs/STRchive-disease-loci.T2T-chm13.straglr.bed
@@ -40,8 +40,8 @@ chr12 6947903 6947941 CAG DRPLA_ATN1 DRPLA_ATN1
chr12 50468095 50468118 GGC FRA12A_DIP2B FRA12A_DIP2B
chr12 111575873 111575940 CTG SCA2_ATXN2 SCA2_ATXN2
chr12 123532573 123532603 GGC OPDM4_RILPL1 OPDM4_RILPL1
-chr13 69361213 69361243 CTA SCA8_ATXN8OS SCA8_ATXN8OS_CTA
-chr13 69361243 69361270 CTG SCA8_ATXN8OS SCA8_ATXN8OS
+chr13 69361185 69361215 CTA SCA8_ATXN8OS SCA8_ATXN8OS_CTA
+chr13 69361215 69361270 CTG SCA8_ATXN8OS SCA8_ATXN8OS
chr13 99196358 99196404 GCN HPE5_ZIC2 HPE5_ZIC2
chr13 101377549 101377792 GAA SCA27B_FGF14 SCA27B_FGF14
chr14 17522488 17522519 GCN OPMD_PABPN1 OPMD_PABPN1
diff --git a/data/catalogs/STRchive-disease-loci.T2T-chm13.stranger.json b/data/catalogs/STRchive-disease-loci.T2T-chm13.stranger.json
index c24a0a9d..8e63fe73 100644
--- a/data/catalogs/STRchive-disease-loci.T2T-chm13.stranger.json
+++ b/data/catalogs/STRchive-disease-loci.T2T-chm13.stranger.json
@@ -504,11 +504,11 @@
},
{
"LocusId": "SCA8_ATXN8OS",
- "ReferenceRegion": ["chr13:69361213-69361243", "chr13:69361243-69361270"],
+ "ReferenceRegion": ["chr13:69361185-69361215", "chr13:69361215-69361270"],
"LocusStructure": "(CTA)*(CTG)*",
"VariantType": ["Repeat", "Repeat"],
"VariantId": ["SCA8_ATXN8OS_CTA", "SCA8_ATXN8OS"],
- "PathologicRegion": "chr13:69361243-69361270",
+ "PathologicRegion": "chr13:69361215-69361270",
"HGNCId": null,
"InheritanceMode": ["AD"],
"DisplayRU": "CTG",
diff --git a/data/catalogs/STRchive-disease-loci.hg19.TRGT.bed b/data/catalogs/STRchive-disease-loci.hg19.TRGT.bed
index ab47340c..13825101 100644
--- a/data/catalogs/STRchive-disease-loci.hg19.TRGT.bed
+++ b/data/catalogs/STRchive-disease-loci.hg19.TRGT.bed
@@ -36,7 +36,7 @@ chr12 7045879 7045938 ID=DRPLA_ATN1;MOTIFS=CAG;STRUC=
chr12 50898784 50898807 ID=FRA12A_DIP2B;MOTIFS=GGC;STRUC=
chr12 112036753 112036823 ID=SCA2_ATXN2;MOTIFS=CTG;STRUC=
chr12 124018267 124018297 ID=OPDM4_RILPL1;MOTIFS=GGC;STRUC=
-chr13 70713485 70713561 ID=SCA8_ATXN8OS;MOTIFS=CTA,CTG;STRUC=
+chr13 70713455 70713561 ID=SCA8_ATXN8OS;MOTIFS=CTA,CTG;STRUC=
chr13 100637702 100637748 ID=HPE5_ZIC2;MOTIFS=GCN;STRUC=
chr13 102813924 102814076 ID=SCA27B_FGF14;MOTIFS=GAA,GAAGGA,GAAGAAGAAGAAGCA;STRUC=
chr14 23790681 23790712 ID=OPMD_PABPN1;MOTIFS=GCN;STRUC=
diff --git a/data/catalogs/STRchive-disease-loci.hg19.atarva.bed b/data/catalogs/STRchive-disease-loci.hg19.atarva.bed
index 78f66ecc..49b83d3b 100644
--- a/data/catalogs/STRchive-disease-loci.hg19.atarva.bed
+++ b/data/catalogs/STRchive-disease-loci.hg19.atarva.bed
@@ -42,8 +42,8 @@ chr12 7045879 7045938 CAG 3 DRPLA_ATN1
chr12 50898784 50898807 GGC 3 FRA12A_DIP2B
chr12 112036753 112036823 CTG 3 SCA2_ATXN2
chr12 124018267 124018297 GGC 3 OPDM4_RILPL1
-chr13 70713485 70713515 CTA 3 SCA8_ATXN8OS_flank
-chr13 70713515 70713561 CTG 3 SCA8_ATXN8OS
+chr13 70713455 70713485 CTA 3 SCA8_ATXN8OS_flank
+chr13 70713485 70713561 CTG 3 SCA8_ATXN8OS
chr13 100637702 100637748 GCN 3 HPE5_ZIC2
chr13 102813924 102814076 GAA 3 SCA27B_FGF14
chr14 23790681 23790712 GCN 3 OPMD_PABPN1
diff --git a/data/catalogs/STRchive-disease-loci.hg19.atarva.bed.gz b/data/catalogs/STRchive-disease-loci.hg19.atarva.bed.gz
index 98a3a488..1daa48e9 100644
Binary files a/data/catalogs/STRchive-disease-loci.hg19.atarva.bed.gz and b/data/catalogs/STRchive-disease-loci.hg19.atarva.bed.gz differ
diff --git a/data/catalogs/STRchive-disease-loci.hg19.atarva.bed.gz.tbi b/data/catalogs/STRchive-disease-loci.hg19.atarva.bed.gz.tbi
index a3f690d9..2e28ad6f 100644
Binary files a/data/catalogs/STRchive-disease-loci.hg19.atarva.bed.gz.tbi and b/data/catalogs/STRchive-disease-loci.hg19.atarva.bed.gz.tbi differ
diff --git a/data/catalogs/STRchive-disease-loci.hg19.general.bed b/data/catalogs/STRchive-disease-loci.hg19.general.bed
index a44fe09d..cda515d7 100644
--- a/data/catalogs/STRchive-disease-loci.hg19.general.bed
+++ b/data/catalogs/STRchive-disease-loci.hg19.general.bed
@@ -37,7 +37,7 @@ chr12 7045879 7045938 DRPLA_ATN1 ATN1 CAG CAG 48 AD Dentatorubral-Pallidoluysian
chr12 50898784 50898807 FRA12A_DIP2B DIP2B GGC GGC 273 AD Intellectual developmental disorder, FRA12A type
chr12 112036753 112036823 SCA2_ATXN2 ATXN2 CTG CTG 35 AD,AR Spinocerebellar ataxia type 2
chr12 124018267 124018297 OPDM4_RILPL1 RILPL1 GGC GGC 120 AD Oculopharyngodistal myopathy type 4
-chr13 70713515 70713561 SCA8_ATXN8OS ATXN8OS CTG CTG 71 AD Spinocerebellar ataxia type 8
+chr13 70713485 70713561 SCA8_ATXN8OS ATXN8OS CTG,CTA CTG,CTA 71 AD Spinocerebellar ataxia type 8
chr13 100637702 100637748 HPE5_ZIC2 ZIC2 GCN GCN 25 AD Holoprosencephaly-5
chr13 102813924 102814076 SCA27B_FGF14 FGF14 GAA GAA 320 AD Spinocerebellar ataxia 27B
chr14 23790681 23790712 OPMD_PABPN1 PABPN1 GCN GCN 12 AD,AR Oculopharyngeal muscular dystrophy
diff --git a/data/catalogs/STRchive-disease-loci.hg19.longTR.bed b/data/catalogs/STRchive-disease-loci.hg19.longTR.bed
index 3ba18238..b1993f7b 100644
--- a/data/catalogs/STRchive-disease-loci.hg19.longTR.bed
+++ b/data/catalogs/STRchive-disease-loci.hg19.longTR.bed
@@ -36,7 +36,7 @@ chr12 7045880 7045938 CAG DRPLA_ATN1
chr12 50898785 50898807 GGC FRA12A_DIP2B
chr12 112036754 112036823 CTG SCA2_ATXN2
chr12 124018268 124018297 GGC OPDM4_RILPL1
-chr13 70713516 70713561 CTG SCA8_ATXN8OS
+chr13 70713486 70713561 CTG,CTA SCA8_ATXN8OS
chr13 100637703 100637748 GCN HPE5_ZIC2
chr13 102813925 102814076 GAA,GAAGGA,GAAGAAGAAGAAGCA SCA27B_FGF14
chr14 23790682 23790712 GCN OPMD_PABPN1
diff --git a/data/catalogs/STRchive-disease-loci.hg19.straglr.bed b/data/catalogs/STRchive-disease-loci.hg19.straglr.bed
index 9e52fca2..0a9a56c9 100644
--- a/data/catalogs/STRchive-disease-loci.hg19.straglr.bed
+++ b/data/catalogs/STRchive-disease-loci.hg19.straglr.bed
@@ -40,8 +40,8 @@ chr12 7045879 7045938 CAG DRPLA_ATN1 DRPLA_ATN1
chr12 50898784 50898807 GGC FRA12A_DIP2B FRA12A_DIP2B
chr12 112036753 112036823 CTG SCA2_ATXN2 SCA2_ATXN2
chr12 124018267 124018297 GGC OPDM4_RILPL1 OPDM4_RILPL1
-chr13 70713485 70713515 CTA SCA8_ATXN8OS SCA8_ATXN8OS_CTA
-chr13 70713515 70713561 CTG SCA8_ATXN8OS SCA8_ATXN8OS
+chr13 70713455 70713485 CTA SCA8_ATXN8OS SCA8_ATXN8OS_CTA
+chr13 70713485 70713561 CTG SCA8_ATXN8OS SCA8_ATXN8OS
chr13 100637702 100637748 GCN HPE5_ZIC2 HPE5_ZIC2
chr13 102813924 102814076 GAA SCA27B_FGF14 SCA27B_FGF14
chr14 23790681 23790712 GCN OPMD_PABPN1 OPMD_PABPN1
diff --git a/data/catalogs/STRchive-disease-loci.hg19.stranger.json b/data/catalogs/STRchive-disease-loci.hg19.stranger.json
index 9da2ed04..00d119f1 100644
--- a/data/catalogs/STRchive-disease-loci.hg19.stranger.json
+++ b/data/catalogs/STRchive-disease-loci.hg19.stranger.json
@@ -504,11 +504,11 @@
},
{
"LocusId": "SCA8_ATXN8OS",
- "ReferenceRegion": ["chr13:70713485-70713515", "chr13:70713515-70713561"],
+ "ReferenceRegion": ["chr13:70713455-70713485", "chr13:70713485-70713561"],
"LocusStructure": "(CTA)*(CTG)*",
"VariantType": ["Repeat", "Repeat"],
"VariantId": ["SCA8_ATXN8OS_CTA", "SCA8_ATXN8OS"],
- "PathologicRegion": "chr13:70713515-70713561",
+ "PathologicRegion": "chr13:70713485-70713561",
"HGNCId": null,
"InheritanceMode": ["AD"],
"DisplayRU": "CTG",
diff --git a/data/catalogs/STRchive-disease-loci.hg38.TRGT.bed b/data/catalogs/STRchive-disease-loci.hg38.TRGT.bed
index 75c81b02..b7c1335a 100644
--- a/data/catalogs/STRchive-disease-loci.hg38.TRGT.bed
+++ b/data/catalogs/STRchive-disease-loci.hg38.TRGT.bed
@@ -36,7 +36,7 @@ chr12 6936716 6936775 ID=DRPLA_ATN1;MOTIFS=CAG;STRUC=
chr12 50505001 50505024 ID=FRA12A_DIP2B;MOTIFS=GGC;STRUC=
chr12 111598949 111599019 ID=SCA2_ATXN2;MOTIFS=CTG;STRUC=
chr12 123533720 123533750 ID=OPDM4_RILPL1;MOTIFS=GGC;STRUC=
-chr13 70139353 70139429 ID=SCA8_ATXN8OS;MOTIFS=CTA,CTG;STRUC=
+chr13 70139323 70139429 ID=SCA8_ATXN8OS;MOTIFS=CTA,CTG;STRUC=
chr13 99985448 99985494 ID=HPE5_ZIC2;MOTIFS=GCN;STRUC=
chr13 102161574 102161726 ID=SCA27B_FGF14;MOTIFS=GAA,GAAGGA,GAAGAAGAAGAAGCA;STRUC=
chr14 23321472 23321503 ID=OPMD_PABPN1;MOTIFS=GCN;STRUC=
diff --git a/data/catalogs/STRchive-disease-loci.hg38.atarva.bed b/data/catalogs/STRchive-disease-loci.hg38.atarva.bed
index 8311febd..baa1447c 100644
--- a/data/catalogs/STRchive-disease-loci.hg38.atarva.bed
+++ b/data/catalogs/STRchive-disease-loci.hg38.atarva.bed
@@ -42,8 +42,8 @@ chr12 6936716 6936775 CAG 3 DRPLA_ATN1
chr12 50505001 50505024 GGC 3 FRA12A_DIP2B
chr12 111598949 111599019 CTG 3 SCA2_ATXN2
chr12 123533720 123533750 GGC 3 OPDM4_RILPL1
-chr13 70139353 70139383 CTA 3 SCA8_ATXN8OS_flank
-chr13 70139383 70139429 CTG 3 SCA8_ATXN8OS
+chr13 70139323 70139353 CTA 3 SCA8_ATXN8OS_flank
+chr13 70139353 70139429 CTG 3 SCA8_ATXN8OS
chr13 99985448 99985494 GCN 3 HPE5_ZIC2
chr13 102161574 102161726 GAA 3 SCA27B_FGF14
chr14 23321472 23321503 GCN 3 OPMD_PABPN1
diff --git a/data/catalogs/STRchive-disease-loci.hg38.atarva.bed.gz b/data/catalogs/STRchive-disease-loci.hg38.atarva.bed.gz
index 23164d4e..449d726b 100644
Binary files a/data/catalogs/STRchive-disease-loci.hg38.atarva.bed.gz and b/data/catalogs/STRchive-disease-loci.hg38.atarva.bed.gz differ
diff --git a/data/catalogs/STRchive-disease-loci.hg38.atarva.bed.gz.tbi b/data/catalogs/STRchive-disease-loci.hg38.atarva.bed.gz.tbi
index 3f8940db..6daa56c3 100644
Binary files a/data/catalogs/STRchive-disease-loci.hg38.atarva.bed.gz.tbi and b/data/catalogs/STRchive-disease-loci.hg38.atarva.bed.gz.tbi differ
diff --git a/data/catalogs/STRchive-disease-loci.hg38.general.bed b/data/catalogs/STRchive-disease-loci.hg38.general.bed
index b77e7175..755b77cd 100644
--- a/data/catalogs/STRchive-disease-loci.hg38.general.bed
+++ b/data/catalogs/STRchive-disease-loci.hg38.general.bed
@@ -37,7 +37,7 @@ chr12 6936716 6936775 DRPLA_ATN1 ATN1 CAG CAG 48 AD Dentatorubral-Pallidoluysian
chr12 50505001 50505024 FRA12A_DIP2B DIP2B GGC GGC 273 AD Intellectual developmental disorder, FRA12A type
chr12 111598949 111599019 SCA2_ATXN2 ATXN2 CTG CTG 35 AD,AR Spinocerebellar ataxia type 2
chr12 123533720 123533750 OPDM4_RILPL1 RILPL1 GGC GGC 120 AD Oculopharyngodistal myopathy type 4
-chr13 70139383 70139429 SCA8_ATXN8OS ATXN8OS CTG CTG 71 AD Spinocerebellar ataxia type 8
+chr13 70139353 70139429 SCA8_ATXN8OS ATXN8OS CTG,CTA CTG,CTA 71 AD Spinocerebellar ataxia type 8
chr13 99985448 99985494 HPE5_ZIC2 ZIC2 GCN GCN 25 AD Holoprosencephaly-5
chr13 102161574 102161726 SCA27B_FGF14 FGF14 GAA GAA 320 AD Spinocerebellar ataxia 27B
chr14 23321472 23321503 OPMD_PABPN1 PABPN1 GCN GCN 12 AD,AR Oculopharyngeal muscular dystrophy
diff --git a/data/catalogs/STRchive-disease-loci.hg38.longTR.bed b/data/catalogs/STRchive-disease-loci.hg38.longTR.bed
index 8a36b988..4ba04b5c 100644
--- a/data/catalogs/STRchive-disease-loci.hg38.longTR.bed
+++ b/data/catalogs/STRchive-disease-loci.hg38.longTR.bed
@@ -36,7 +36,7 @@ chr12 6936717 6936775 CAG DRPLA_ATN1
chr12 50505002 50505024 GGC FRA12A_DIP2B
chr12 111598950 111599019 CTG SCA2_ATXN2
chr12 123533721 123533750 GGC OPDM4_RILPL1
-chr13 70139384 70139429 CTG SCA8_ATXN8OS
+chr13 70139354 70139429 CTG,CTA SCA8_ATXN8OS
chr13 99985449 99985494 GCN HPE5_ZIC2
chr13 102161575 102161726 GAA,GAAGGA,GAAGAAGAAGAAGCA SCA27B_FGF14
chr14 23321473 23321503 GCN OPMD_PABPN1
diff --git a/data/catalogs/STRchive-disease-loci.hg38.straglr.bed b/data/catalogs/STRchive-disease-loci.hg38.straglr.bed
index 6b4a89c4..9fa8c0c0 100644
--- a/data/catalogs/STRchive-disease-loci.hg38.straglr.bed
+++ b/data/catalogs/STRchive-disease-loci.hg38.straglr.bed
@@ -40,8 +40,8 @@ chr12 6936716 6936775 CAG DRPLA_ATN1 DRPLA_ATN1
chr12 50505001 50505024 GGC FRA12A_DIP2B FRA12A_DIP2B
chr12 111598949 111599019 CTG SCA2_ATXN2 SCA2_ATXN2
chr12 123533720 123533750 GGC OPDM4_RILPL1 OPDM4_RILPL1
-chr13 70139353 70139383 CTA SCA8_ATXN8OS SCA8_ATXN8OS_CTA
-chr13 70139383 70139429 CTG SCA8_ATXN8OS SCA8_ATXN8OS
+chr13 70139323 70139353 CTA SCA8_ATXN8OS SCA8_ATXN8OS_CTA
+chr13 70139353 70139429 CTG SCA8_ATXN8OS SCA8_ATXN8OS
chr13 99985448 99985494 GCN HPE5_ZIC2 HPE5_ZIC2
chr13 102161574 102161726 GAA SCA27B_FGF14 SCA27B_FGF14
chr14 23321472 23321503 GCN OPMD_PABPN1 OPMD_PABPN1
diff --git a/data/catalogs/STRchive-disease-loci.hg38.stranger.json b/data/catalogs/STRchive-disease-loci.hg38.stranger.json
index 3231f70c..5c3c638f 100644
--- a/data/catalogs/STRchive-disease-loci.hg38.stranger.json
+++ b/data/catalogs/STRchive-disease-loci.hg38.stranger.json
@@ -504,11 +504,11 @@
},
{
"LocusId": "SCA8_ATXN8OS",
- "ReferenceRegion": ["chr13:70139353-70139383", "chr13:70139383-70139429"],
+ "ReferenceRegion": ["chr13:70139323-70139353", "chr13:70139353-70139429"],
"LocusStructure": "(CTA)*(CTG)*",
"VariantType": ["Repeat", "Repeat"],
"VariantId": ["SCA8_ATXN8OS_CTA", "SCA8_ATXN8OS"],
- "PathologicRegion": "chr13:70139383-70139429",
+ "PathologicRegion": "chr13:70139353-70139429",
"HGNCId": null,
"InheritanceMode": ["AD"],
"DisplayRU": "CTG",
diff --git a/data/ref-alleles/ref-alleles.T2T-chm13.txt b/data/ref-alleles/ref-alleles.T2T-chm13.txt
index 1ce62e6a..c5eccaec 100644
--- a/data/ref-alleles/ref-alleles.T2T-chm13.txt
+++ b/data/ref-alleles/ref-alleles.T2T-chm13.txt
@@ -227,10 +227,10 @@ CTCCCGAGTG GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC AGCGGGGAGG
CTCCCGAGTG GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC AGCGGGGAGG
SCA8_ATXN8OS
-chr13 69361243 69361270 CTG STRchive
-chr13 69361213 69361270 CTA,CTG TRGT
-AAACCTGGCTTTACTACTACTACTACTACTACTACTACTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CATTTTTTAA
-AAACCTGGCT TTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CATTTTTTAA
+chr13 69361215 69361270 CTG,CTA STRchive
+chr13 69361185 69361270 CTA,CTG TRGT
+GGCTAGACCCTGGGTCCTTCATGTTAGAAAACCTGGCTTT A CTA CTA CTA CTA CTA CTA CTA CTA CTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CATTTTTTAA
+GGCTAGACCC TGGGTCCTTCATGTTAGAAAAC CTG GCTTTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CATTTTTTAA
HPE5_ZIC2
chr13 99196358 99196404 GCN STRchive
diff --git a/data/ref-alleles/ref-alleles.hg19.txt b/data/ref-alleles/ref-alleles.hg19.txt
index 4571380e..a68c384c 100644
--- a/data/ref-alleles/ref-alleles.hg19.txt
+++ b/data/ref-alleles/ref-alleles.hg19.txt
@@ -227,10 +227,10 @@ CTCCCGAGTG GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC AGCGGGGAGG
CTCCCGAGTG GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC AGCGGGGAGG
SCA8_ATXN8OS
-chr13 70713515 70713561 CTG STRchive
-chr13 70713485 70713561 CTA,CTG TRGT
-CCTGGCTTTACTACTACTACTACTACTACTACTACTACTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG C ATTTTTTAAA
-CCTGGCTTTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG C ATTTTTTAAA
+chr13 70713485 70713561 CTG,CTA STRchive
+chr13 70713455 70713561 CTA,CTG TRGT
+GCTAGACCCTGGGTCCTTCATGTTAGAAAACCTGGCTTTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG C ATTTTTTAAA
+GCTAGACCCT GGGTCCTTCATGTTAGAAAAC CTG GCTTTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG C ATTTTTTAAA
HPE5_ZIC2
chr13 100637702 100637748 GCN STRchive
diff --git a/data/ref-alleles/ref-alleles.hg38.txt b/data/ref-alleles/ref-alleles.hg38.txt
index a7875038..364df873 100644
--- a/data/ref-alleles/ref-alleles.hg38.txt
+++ b/data/ref-alleles/ref-alleles.hg38.txt
@@ -227,10 +227,10 @@ CTCCCGAGTG GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC AGCGGGGAGG
CTCCCGAGTG GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC AGCGGGGAGG
SCA8_ATXN8OS
-chr13 70139383 70139429 CTG STRchive
-chr13 70139353 70139429 CTA,CTG TRGT
-CCTGGCTTTACTACTACTACTACTACTACTACTACTACTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG C ATTTTTTAAA
-CCTGGCTTTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG C ATTTTTTAAA
+chr13 70139353 70139429 CTG,CTA STRchive
+chr13 70139323 70139429 CTA,CTG TRGT
+GCTAGACCCTGGGTCCTTCATGTTAGAAAACCTGGCTTTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG C ATTTTTTAAA
+GCTAGACCCT GGGTCCTTCATGTTAGAAAAC CTG GCTTTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG C ATTTTTTAAA
HPE5_ZIC2
chr13 99985448 99985494 GCN STRchive