From d053bbf513ce0ed4685d32dd4dc397bc3b1a2784 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 10:44:43 -0700
Subject: [PATCH 01/77] f

---
 .github/workflows/r_command_check.yaml | 8 ++++----
 DESCRIPTION                            | 1 +
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 10c23f9..75aa6c0 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -18,16 +18,16 @@ jobs:
         config:
           - {os: macOS-latest,   r: 'release'}
           - {os: windows-latest, r: 'release'}
-          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
-          - {os: ubuntu-latest,   r: 'release'}
-          - {os: ubuntu-latest,   r: 'oldrel-1'}
+          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,  r: 'release'}
+          - {os: ubuntu-latest,  r: 'oldrel-1'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 
diff --git a/DESCRIPTION b/DESCRIPTION
index f50db63..343a9df 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -16,5 +16,6 @@ Suggests:
   knitr,
   rmarkdown,
   testthat
+SystemRequirements: JAGS 4.x.y
 Encoding: UTF-8
 RoxygenNote: 7.2.3

From 2c705fe09f5b33a045b34cbdfbfaf04a362c7317 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 10:55:36 -0700
Subject: [PATCH 02/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index f7a8103..844deed 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -5,3 +5,11 @@ test_that("test", {
   expect_equal(1, 1)
   
 })
+
+message(rjags::jags.version())
+
+test_that("test", {
+
+  expect_equal(1, 1)
+  
+})
\ No newline at end of file

From eecb7ffda4fdd98426f63b15bbe50d5b3a79bc11 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 11:04:04 -0700
Subject: [PATCH 03/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 75aa6c0..49ad8f6 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -37,6 +37,11 @@ jobs:
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
+      - name: Install system dependencies on non-Linux
+        if: runner.os == 'maxOS'
+        run: |
+          brew install jags
+
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::rcmdcheck

From 9511d183f6b7a6c5911dbc2129dbe1637543b65c Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 11:04:21 -0700
Subject: [PATCH 04/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 49ad8f6..0b0535a 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -38,7 +38,7 @@ jobs:
           use-public-rspm: true
 
       - name: Install system dependencies on non-Linux
-        if: runner.os == 'maxOS'
+        if: runner.os == 'macOS'
         run: |
           brew install jags
 

From d1db8a40f2904152a5c041d33b51fa66d34d4f32 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 11:29:54 -0700
Subject: [PATCH 05/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 19 ++++++++++++++++++-
 1 file changed, 18 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 0b0535a..fa2ff07 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -37,11 +37,28 @@ jobs:
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
-      - name: Install system dependencies on non-Linux
+      - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
           brew install jags
 
+      - name: Install system dependencies on Windows
+        if: runner.os == 'windows'
+        run: |
+          pacman -Syu mingw-w64-x86_64-make --noconfirm
+          g++ --version
+          Get-Command g++ | Select-Object -ExpandProperty Definition
+          mingw32-make --version
+          Get-Command mingw32-make | Select-Object -ExpandProperty Definition
+          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.0.exe', 'C:\JAGS-4.3.0.exe')
+        shell: powershell
+
+      - name: Install JAGS on Windows
+        if: runner.os == 'Windows'
+        run: C:\JAGS-4.3.0.exe /S
+        shell: cmd
+          
+
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::rcmdcheck

From 0e911e9a786fe9792f49803517a163510dcc4bee Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 11:40:57 -0700
Subject: [PATCH 06/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 9 ++-------
 1 file changed, 2 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index fa2ff07..98cd5e8 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,17 +45,12 @@ jobs:
       - name: Install system dependencies on Windows
         if: runner.os == 'windows'
         run: |
-          pacman -Syu mingw-w64-x86_64-make --noconfirm
-          g++ --version
-          Get-Command g++ | Select-Object -ExpandProperty Definition
-          mingw32-make --version
-          Get-Command mingw32-make | Select-Object -ExpandProperty Definition
-          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.0.exe', 'C:\JAGS-4.3.0.exe')
+          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.2.exe', 'C:\JAGS-4.3.2.exe')
         shell: powershell
 
       - name: Install JAGS on Windows
         if: runner.os == 'Windows'
-        run: C:\JAGS-4.3.0.exe /S
+        run: C:\JAGS-4.3.2.exe /S
         shell: cmd
           
 

From 6b95c49ac0b1ecf81235d149c8d4c2944a6669b8 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 11:44:32 -0700
Subject: [PATCH 07/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 98cd5e8..3bfe761 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,12 +45,12 @@ jobs:
       - name: Install system dependencies on Windows
         if: runner.os == 'windows'
         run: |
-          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.2.exe', 'C:\JAGS-4.3.2.exe')
+          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
         shell: powershell
 
       - name: Install JAGS on Windows
         if: runner.os == 'Windows'
-        run: C:\JAGS-4.3.2.exe /S
+        run: C:\JAGS-4.3.1.exe /S
         shell: cmd
           
 

From eb79304d76036b2293854ed2991e39f6652bae80 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 11:59:58 -0700
Subject: [PATCH 08/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 10 +++-------
 1 file changed, 3 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 3bfe761..62ea1e0 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -43,14 +43,10 @@ jobs:
           brew install jags
 
       - name: Install system dependencies on Windows
-        if: runner.os == 'windows'
-        run: |
-          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
-        shell: powershell
-
-      - name: Install JAGS on Windows
         if: runner.os == 'Windows'
-        run: C:\JAGS-4.3.1.exe /S
+        run: |
+          powershell -c "Invoke-WebRequest -Uri 'https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe' -Outfile 'C:\JAGS-4.3.1.exe'"
+          C:\JAGS-4.3.1.exe /S
         shell: cmd
           
 

From f2422d5003b8cae55b04eb1d2996ad51fb672573 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 12:04:48 -0700
Subject: [PATCH 09/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 62ea1e0..7a54cae 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -43,9 +43,14 @@ jobs:
           brew install jags
 
       - name: Install system dependencies on Windows
+        if: runner.os == 'windows'
+        run: |
+          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
+        shell: powershell
+
+      - name: Install JAGS on Windows
         if: runner.os == 'Windows'
         run: |
-          powershell -c "Invoke-WebRequest -Uri 'https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe' -Outfile 'C:\JAGS-4.3.1.exe'"
           C:\JAGS-4.3.1.exe /S
         shell: cmd
           

From a3b28ec30425e0cefd3061302ed74f686b43f3d3 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 12:19:22 -0700
Subject: [PATCH 10/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 7a54cae..6d4f875 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,7 +45,7 @@ jobs:
       - name: Install system dependencies on Windows
         if: runner.os == 'windows'
         run: |
-          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
+          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -O C:\JAGS-4.3.1.exe
         shell: powershell
 
       - name: Install JAGS on Windows

From fde97725a0af0b182e4b8fbe59db3f219d7b4132 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 12:25:41 -0700
Subject: [PATCH 11/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 6d4f875..7a54cae 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,7 +45,7 @@ jobs:
       - name: Install system dependencies on Windows
         if: runner.os == 'windows'
         run: |
-          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -O C:\JAGS-4.3.1.exe
+          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
         shell: powershell
 
       - name: Install JAGS on Windows

From c912bf17c121367c5c94b2a3798d9ad84d99ec0f Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 13:23:24 -0700
Subject: [PATCH 12/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 7a54cae..bd4caa9 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,13 +45,13 @@ jobs:
       - name: Install system dependencies on Windows
         if: runner.os == 'windows'
         run: |
-          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
+          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/latest/download', 'C:\JAGS-latest.exe')
         shell: powershell
 
       - name: Install JAGS on Windows
         if: runner.os == 'Windows'
         run: |
-          C:\JAGS-4.3.1.exe /S
+          C:\JAGS-latest.exe /S
         shell: cmd
           
 

From 8c178392b067da01e9e16b9cb9c5412b28d8fb73 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 13:30:04 -0700
Subject: [PATCH 13/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index bd4caa9..b2596a2 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -42,16 +42,22 @@ jobs:
         run: |
           brew install jags
 
+      - name: curl test
+        if: runner.os == 'Windows'
+        run: |
+          curl https://reqbin.com/echo
+        shell: cmd
+          
       - name: Install system dependencies on Windows
         if: runner.os == 'windows'
         run: |
-          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/latest/download', 'C:\JAGS-latest.exe')
+          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
         shell: powershell
 
       - name: Install JAGS on Windows
         if: runner.os == 'Windows'
         run: |
-          C:\JAGS-latest.exe /S
+          C:\JAGS-4.3.1.exe /S
         shell: cmd
           
 

From 338bc9efbff68dab9bd5e132e4d4e5bfa4474d95 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 13:33:49 -0700
Subject: [PATCH 14/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index b2596a2..31e3666 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,7 +45,7 @@ jobs:
       - name: curl test
         if: runner.os == 'Windows'
         run: |
-          curl https://reqbin.com/echo
+          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe
         shell: cmd
           
       - name: Install system dependencies on Windows

From f9f1f6f7c991ad761eb9e9780a6363950f38cc9c Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 13:37:50 -0700
Subject: [PATCH 15/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 31e3666..d134664 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,7 +45,7 @@ jobs:
       - name: curl test
         if: runner.os == 'Windows'
         run: |
-          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe
+          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -O curlJAGS-4.3.1.exe
         shell: cmd
           
       - name: Install system dependencies on Windows

From dd0d8c41356f54ac88f9558c36a4e119738659de Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 13:38:27 -0700
Subject: [PATCH 16/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index d134664..b64e6f6 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,7 +45,7 @@ jobs:
       - name: curl test
         if: runner.os == 'Windows'
         run: |
-          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -O curlJAGS-4.3.1.exe
+          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o curlJAGS-4.3.1.exe
         shell: cmd
           
       - name: Install system dependencies on Windows

From 618546826f1754400920bd1248368e5f10da3cc4 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 13:40:05 -0700
Subject: [PATCH 17/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index b64e6f6..4dddf14 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,7 +45,7 @@ jobs:
       - name: curl test
         if: runner.os == 'Windows'
         run: |
-          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o curlJAGS-4.3.1.exe
+          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\curlJAGS-4.3.1.exe
         shell: cmd
           
       - name: Install system dependencies on Windows

From 056da0cbb7e39f90399e8f55d63afad35b6ce944 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 13:43:50 -0700
Subject: [PATCH 18/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 8 +-------
 1 file changed, 1 insertion(+), 7 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 4dddf14..fb11d5f 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,14 +45,8 @@ jobs:
       - name: curl test
         if: runner.os == 'Windows'
         run: |
-          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\curlJAGS-4.3.1.exe
+          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1.exe
         shell: cmd
-          
-      - name: Install system dependencies on Windows
-        if: runner.os == 'windows'
-        run: |
-          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
-        shell: powershell
 
       - name: Install JAGS on Windows
         if: runner.os == 'Windows'

From 4835289d86e99a2c8d6a0e7346e8a7bf11207529 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 13:51:52 -0700
Subject: [PATCH 19/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index fb11d5f..2cee3c6 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,8 +45,14 @@ jobs:
       - name: curl test
         if: runner.os == 'Windows'
         run: |
-          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1.exe
+          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\cJAGS-4.3.1.exe
         shell: cmd
+          
+      - name: Install system dependencies on Windows
+        if: runner.os == 'windows'
+        run: |
+          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
+        shell: powershell
 
       - name: Install JAGS on Windows
         if: runner.os == 'Windows'

From b2cf9c4c952c0b31b12fa32366a31ca91cb66089 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 14:01:32 -0700
Subject: [PATCH 20/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 8 +-------
 1 file changed, 1 insertion(+), 7 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 2cee3c6..247d99d 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -45,15 +45,9 @@ jobs:
       - name: curl test
         if: runner.os == 'Windows'
         run: |
-          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\cJAGS-4.3.1.exe
+          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1.exe
         shell: cmd
           
-      - name: Install system dependencies on Windows
-        if: runner.os == 'windows'
-        run: |
-          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
-        shell: powershell
-
       - name: Install JAGS on Windows
         if: runner.os == 'Windows'
         run: |

From 4da1b5b23b0ed7c36874a7abce5955581947966e Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 14:05:05 -0700
Subject: [PATCH 21/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 247d99d..fba66c1 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -51,6 +51,7 @@ jobs:
       - name: Install JAGS on Windows
         if: runner.os == 'Windows'
         run: |
+          ls C:\
           C:\JAGS-4.3.1.exe /S
         shell: cmd
           

From 3f44625bd5f2116ee6b04ed9fd29a9da1bf3906c Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 14:05:28 -0700
Subject: [PATCH 22/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index fba66c1..97a7203 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -51,7 +51,7 @@ jobs:
       - name: Install JAGS on Windows
         if: runner.os == 'Windows'
         run: |
-          ls C:\
+          dir C:\
           C:\JAGS-4.3.1.exe /S
         shell: cmd
           

From eb83e79cec5f6cf8e6d8297b0ca565179a277878 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 14:08:08 -0700
Subject: [PATCH 23/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 97a7203..aa909b8 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -52,7 +52,7 @@ jobs:
         if: runner.os == 'Windows'
         run: |
           dir C:\
-          C:\JAGS-4.3.1.exe /S
+          C:\JAGS-4.3.1.exe
         shell: cmd
           
 

From 6ce929d12fc308e8335006c49fb149fea8edb9b4 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 14:08:24 -0700
Subject: [PATCH 24/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index aa909b8..a13cf4c 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,11 +46,6 @@ jobs:
         if: runner.os == 'Windows'
         run: |
           curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1.exe
-        shell: cmd
-          
-      - name: Install JAGS on Windows
-        if: runner.os == 'Windows'
-        run: |
           dir C:\
           C:\JAGS-4.3.1.exe
         shell: cmd

From d83f0c10c5cb726f337229010875add85b860971 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 14:14:20 -0700
Subject: [PATCH 25/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index a13cf4c..76d60ae 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -42,10 +42,17 @@ jobs:
         run: |
           brew install jags
 
+          
+      - name: Install system dependencies on Windows
+        if: runner.os == 'windows'
+        run: |
+          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
+        shell: powershell
+
+
       - name: curl test
         if: runner.os == 'Windows'
         run: |
-          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1.exe
           dir C:\
           C:\JAGS-4.3.1.exe
         shell: cmd

From 50641482755a4137b59661db42ac10cfd1d924de Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 14:16:55 -0700
Subject: [PATCH 26/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 76d60ae..b0cd1b5 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -54,7 +54,7 @@ jobs:
         if: runner.os == 'Windows'
         run: |
           dir C:\
-          C:\JAGS-4.3.1.exe
+          C:\JAGS-4.3.1.exe /S
         shell: cmd
           
 

From dba42123cee03b3c4a1795aaddb3f54cd086a2e8 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 14:24:47 -0700
Subject: [PATCH 27/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index b0cd1b5..d246996 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -53,6 +53,7 @@ jobs:
       - name: curl test
         if: runner.os == 'Windows'
         run: |
+          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1ccc.exe
           dir C:\
           C:\JAGS-4.3.1.exe /S
         shell: cmd

From de6584ee3340d2cd2615c023ad8afd8f12dbb5ea Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 14:40:30 -0700
Subject: [PATCH 28/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index d246996..94c04c1 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -53,7 +53,7 @@ jobs:
       - name: curl test
         if: runner.os == 'Windows'
         run: |
-          curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1ccc.exe
+          curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1ccc.exe
           dir C:\
           C:\JAGS-4.3.1.exe /S
         shell: cmd

From 05412ea9d00d673ae5080a22ea987f385fcdfe76 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 14:46:14 -0700
Subject: [PATCH 29/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 9 +--------
 1 file changed, 1 insertion(+), 8 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 94c04c1..b5c55dd 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -44,16 +44,9 @@ jobs:
 
           
       - name: Install system dependencies on Windows
-        if: runner.os == 'windows'
-        run: |
-          (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
-        shell: powershell
-
-
-      - name: curl test
         if: runner.os == 'Windows'
         run: |
-          curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1ccc.exe
+          curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1.exe
           dir C:\
           C:\JAGS-4.3.1.exe /S
         shell: cmd

From eaa6499280955d149381e9ed18b96c21c4661d11 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 15:00:12 -0700
Subject: [PATCH 30/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index b5c55dd..2d1eb69 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,7 +46,7 @@ jobs:
       - name: Install system dependencies on Windows
         if: runner.os == 'Windows'
         run: |
-          curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe -o C:\JAGS-4.3.1.exe
+          curl --location https://sourceforge.net/projects/mcmc-jags/files/latest/download -o C:\JAGS-4.3.1.exe
           dir C:\
           C:\JAGS-4.3.1.exe /S
         shell: cmd

From a20045f19d7a05e4ff468a08c05114d7978e75a3 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 15:04:59 -0700
Subject: [PATCH 31/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 2d1eb69..d22aa21 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,9 +46,9 @@ jobs:
       - name: Install system dependencies on Windows
         if: runner.os == 'Windows'
         run: |
-          curl --location https://sourceforge.net/projects/mcmc-jags/files/latest/download -o C:\JAGS-4.3.1.exe
+          curl --location https://sourceforge.net/projects/mcmc-jags/files/latest/download -o C:\JAGS-latest.exe
           dir C:\
-          C:\JAGS-4.3.1.exe /S
+          C:\JAGS-latest.exe /S
         shell: cmd
           
 

From 6b64dc34b7369dcc490fffbc9a8a31fdfeda0c39 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 15:20:03 -0700
Subject: [PATCH 32/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 13 ++++++++-----
 1 file changed, 8 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index d22aa21..c841e98 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -1,8 +1,13 @@
+
+
+
 on:
   push:
-    branches: [main]
+    branches: 
+      - main
   pull_request:
-    branches: [main]
+    branches:
+      - main
 
 name: R-CMD-check
 
@@ -23,6 +28,7 @@ jobs:
           - {os: ubuntu-latest,  r: 'oldrel-1'}
 
     env:
+      R_DEFAULT_INTERNET_TIMEOUT: 300
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
 
@@ -41,16 +47,13 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           brew install jags
-
           
       - name: Install system dependencies on Windows
         if: runner.os == 'Windows'
         run: |
           curl --location https://sourceforge.net/projects/mcmc-jags/files/latest/download -o C:\JAGS-latest.exe
-          dir C:\
           C:\JAGS-latest.exe /S
         shell: cmd
-          
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:

From b90b79441cd50317cc0d6764f0e40e0afb446768 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 17:41:02 -0700
Subject: [PATCH 33/77] 4

---
 .github/workflows/r_command_check.yaml | 4 ++--
 DESCRIPTION                            | 3 ++-
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index c841e98..d1ab64e 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -1,5 +1,5 @@
-
-
+# R package checking
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 
 on:
   push:
diff --git a/DESCRIPTION b/DESCRIPTION
index 343a9df..3059205 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -10,7 +10,8 @@ License: MIT
 Date: 2023-04-13
 Depends: R (>= 3.3.1)
 Imports:
-  rjags
+  rjags,
+  runjags
 Suggests:
   covr,
   knitr,

From 4ef838ee048cdf48c055e09d99a3e435551525f5 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 17:47:15 -0700
Subject: [PATCH 34/77] g

---
 DESCRIPTION                 | 1 -
 tests/testthat/test-01-xx.R | 2 +-
 2 files changed, 1 insertion(+), 2 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 3059205..8cc4db9 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -10,7 +10,6 @@ License: MIT
 Date: 2023-04-13
 Depends: R (>= 3.3.1)
 Imports:
-  rjags,
   runjags
 Suggests:
   covr,
diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index 844deed..94fdee5 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -6,7 +6,7 @@ test_that("test", {
   
 })
 
-message(rjags::jags.version())
+(runjags::testjags() )
 
 test_that("test", {
 

From 917747140122c1811be56ca3ec512c0e35d91d37 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 17:57:47 -0700
Subject: [PATCH 35/77] g

---
 DESCRIPTION                 | 2 +-
 tests/testthat/test-01-xx.R | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 8cc4db9..343a9df 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -10,7 +10,7 @@ License: MIT
 Date: 2023-04-13
 Depends: R (>= 3.3.1)
 Imports:
-  runjags
+  rjags
 Suggests:
   covr,
   knitr,
diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index 94fdee5..844deed 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -6,7 +6,7 @@ test_that("test", {
   
 })
 
-(runjags::testjags() )
+message(rjags::jags.version())
 
 test_that("test", {
 

From 20276f76614a102a8af86985c19d04afeba0e911 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 18:04:04 -0700
Subject: [PATCH 36/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index 844deed..3dd7230 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -6,7 +6,7 @@ test_that("test", {
   
 })
 
-message(rjags::jags.version())
+print(rjags::jags.version())
 
 test_that("test", {
 

From 427bd45be9691664ec06ca1270748dcd8bc2516e Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 18:10:22 -0700
Subject: [PATCH 37/77] Update DESCRIPTION

---
 DESCRIPTION | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 343a9df..3059205 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -10,7 +10,8 @@ License: MIT
 Date: 2023-04-13
 Depends: R (>= 3.3.1)
 Imports:
-  rjags
+  rjags,
+  runjags
 Suggests:
   covr,
   knitr,

From 2f00ee9a2bd44843d71c9bb8ac6663ac14fcea94 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 18:15:28 -0700
Subject: [PATCH 38/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index d1ab64e..1ce9db2 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -22,10 +22,10 @@ jobs:
       matrix:
         config:
           - {os: macOS-latest,   r: 'release'}
-          - {os: windows-latest, r: 'release'}
-          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
-          - {os: ubuntu-latest,  r: 'release'}
-          - {os: ubuntu-latest,  r: 'oldrel-1'}
+          #- {os: windows-latest, r: 'release'}
+          #- {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
+          #- {os: ubuntu-latest,  r: 'release'}
+          #- {os: ubuntu-latest,  r: 'oldrel-1'}
 
     env:
       R_DEFAULT_INTERNET_TIMEOUT: 300

From 971a72ada015de5b2b40f8395862987584aee3ef Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 18:17:50 -0700
Subject: [PATCH 39/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 1 +
 1 file changed, 1 insertion(+)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index 3dd7230..c7610a8 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -7,6 +7,7 @@ test_that("test", {
 })
 
 print(rjags::jags.version())
+print(runjags::findjags())
 
 test_that("test", {
 

From da91834a9930737511867ff00131751e3bfd7303 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 18:27:53 -0700
Subject: [PATCH 40/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 28 +++++++++++++++++++++++++++-
 1 file changed, 27 insertions(+), 1 deletion(-)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index c7610a8..cde33ab 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -11,6 +11,32 @@ print(runjags::findjags())
 
 test_that("test", {
 
-  expect_equal(1, 1)
+X <- 1:100
+Y <- rnorm(length(X), 2*X + 10, 1)
+
+# Model in the JAGS format
+model <- "model {
+for(i in 1 : N){
+	Y[i] ~ dnorm(true.y[i], precision);
+	true.y[i] <- (m * X[i]) + c
+}
+m ~ dunif(-1000,1000)
+c ~ dunif(-1000,1000)
+precision ~ dexp(1)
+}"
+
+# Data and initial values in a named list format,
+# with explicit control over the random number
+# generator used for each chain (optional):
+data <- list(X=X, Y=Y, N=length(X))
+inits1 <- list(m=1, c=1, precision=1,
+.RNG.name="base::Super-Duper", .RNG.seed=1)
+inits2 <- list(m=0.1, c=10, precision=1,
+.RNG.name="base::Wichmann-Hill", .RNG.seed=2)
+
+## Not run: 
+# Run the model and produce plots
+results <- run.jags(model=model, monitor=c("m", "c", "precision"),
+data=data, n.chains=2, method="rjags", inits=list(inits1,inits2))
   
 })
\ No newline at end of file

From 8d2d1b9746ffbc3fc7b223f18c873018872b4cb2 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 18:33:35 -0700
Subject: [PATCH 41/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index cde33ab..b91f9bf 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -36,7 +36,7 @@ inits2 <- list(m=0.1, c=10, precision=1,
 
 ## Not run: 
 # Run the model and produce plots
-results <- run.jags(model=model, monitor=c("m", "c", "precision"),
+results <- runjags::run.jags(model=model, monitor=c("m", "c", "precision"),
 data=data, n.chains=2, method="rjags", inits=list(inits1,inits2))
   
 })
\ No newline at end of file

From 621ab8fcf97e5c294de5adbb49c60caf98fad10d Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 18:43:51 -0700
Subject: [PATCH 42/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 29 ++---------------------------
 1 file changed, 2 insertions(+), 27 deletions(-)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index b91f9bf..2228861 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -8,35 +8,10 @@ test_that("test", {
 
 print(rjags::jags.version())
 print(runjags::findjags())
+print(runjags::testjags(runjags::findjags()))
 
 test_that("test", {
 
-X <- 1:100
-Y <- rnorm(length(X), 2*X + 10, 1)
-
-# Model in the JAGS format
-model <- "model {
-for(i in 1 : N){
-	Y[i] ~ dnorm(true.y[i], precision);
-	true.y[i] <- (m * X[i]) + c
-}
-m ~ dunif(-1000,1000)
-c ~ dunif(-1000,1000)
-precision ~ dexp(1)
-}"
-
-# Data and initial values in a named list format,
-# with explicit control over the random number
-# generator used for each chain (optional):
-data <- list(X=X, Y=Y, N=length(X))
-inits1 <- list(m=1, c=1, precision=1,
-.RNG.name="base::Super-Duper", .RNG.seed=1)
-inits2 <- list(m=0.1, c=10, precision=1,
-.RNG.name="base::Wichmann-Hill", .RNG.seed=2)
-
-## Not run: 
-# Run the model and produce plots
-results <- runjags::run.jags(model=model, monitor=c("m", "c", "precision"),
-data=data, n.chains=2, method="rjags", inits=list(inits1,inits2))
+  expect_equal(1, 1)
   
 })
\ No newline at end of file

From ab39e07019294ab789f3d9cbb1d696627b5b4c87 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 18:48:14 -0700
Subject: [PATCH 43/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index 2228861..cf9aa49 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -8,7 +8,7 @@ test_that("test", {
 
 print(rjags::jags.version())
 print(runjags::findjags())
-print(runjags::testjags(runjags::findjags()))
+print(runjags::runjags.getOption("jagspath"))
 
 test_that("test", {
 

From 0de28762ef2533fa49dc033dfd55a869c50fd3aa Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 18:54:51 -0700
Subject: [PATCH 44/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 1 +
 1 file changed, 1 insertion(+)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index cf9aa49..97d7831 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -9,6 +9,7 @@ test_that("test", {
 print(rjags::jags.version())
 print(runjags::findjags())
 print(runjags::runjags.getOption("jagspath"))
+print(runjags::testjags())
 
 test_that("test", {
 

From 77934bfffae8cefbd806ee4d0c95a1e320f6f3c3 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 18:59:29 -0700
Subject: [PATCH 45/77] g

---
 DESCRIPTION                 | 1 -
 tests/testthat/test-01-xx.R | 3 +--
 2 files changed, 1 insertion(+), 3 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 3059205..8cc4db9 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -10,7 +10,6 @@ License: MIT
 Date: 2023-04-13
 Depends: R (>= 3.3.1)
 Imports:
-  rjags,
   runjags
 Suggests:
   covr,
diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index 97d7831..feac1e1 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -6,10 +6,9 @@ test_that("test", {
   
 })
 
-print(rjags::jags.version())
 print(runjags::findjags())
 print(runjags::runjags.getOption("jagspath"))
-print(runjags::testjags())
+
 
 test_that("test", {
 

From 9c4f6c7f05680c50fbdf1b06a6ee51e9048e9633 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 22:28:14 -0700
Subject: [PATCH 46/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 1ce9db2..cdd2577 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -47,6 +47,8 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           brew install jags
+          ls /usr/local/bin
+          ls /usr/local
           
       - name: Install system dependencies on Windows
         if: runner.os == 'Windows'

From 1071a8e55ce157ccb73fc6a3158b44150f945e69 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 22:33:34 -0700
Subject: [PATCH 47/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index cdd2577..645ed7e 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -47,8 +47,7 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           brew install jags
-          ls /usr/local/bin
-          ls /usr/local
+          cp -r ./usr/local/bin/jags ./usr/local/libexec/jags-terminal 
           
       - name: Install system dependencies on Windows
         if: runner.os == 'Windows'

From 916c8b212ddbe4261f424048e2641addd91b04e8 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 22:36:55 -0700
Subject: [PATCH 48/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 645ed7e..f3c99ed 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -47,7 +47,7 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           brew install jags
-          cp -r ./usr/local/bin/jags ./usr/local/libexec/jags-terminal 
+          ls /usr/local/bin/jags
           
       - name: Install system dependencies on Windows
         if: runner.os == 'Windows'

From db3e9667545c8ed9879a7b669aca62afa2611cd7 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 22:41:45 -0700
Subject: [PATCH 49/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index f3c99ed..f73942e 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -47,9 +47,9 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           brew install jags
-          ls /usr/local/bin/jags
+          cp /usr/local/bin/jags /usr/local/libexec/jags-terminal
           
-      - name: Install system dependencies on Windows
+      - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'
         run: |
           curl --location https://sourceforge.net/projects/mcmc-jags/files/latest/download -o C:\JAGS-latest.exe

From 570709482d4a131d081e499b9514f8aaafef99aa Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 22:48:09 -0700
Subject: [PATCH 50/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index f73942e..3417e91 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -47,6 +47,7 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           brew install jags
+          mkdir -p /usr/local/libexec/jags-terminal
           cp /usr/local/bin/jags /usr/local/libexec/jags-terminal
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection

From 7a43f6b58ee01252812525b3be8a23851ca05c15 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Thu, 13 Apr 2023 22:55:09 -0700
Subject: [PATCH 51/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 3417e91..bb7ce35 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -47,8 +47,6 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           brew install jags
-          mkdir -p /usr/local/libexec/jags-terminal
-          cp /usr/local/bin/jags /usr/local/libexec/jags-terminal
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'

From 43afa3d6f6d747e1d91dc07f518cccf16858ab56 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 09:52:58 -0700
Subject: [PATCH 52/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index bb7ce35..00bb0a8 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -11,6 +11,8 @@ on:
 
 name: R-CMD-check
 
+permissions: write-all
+
 jobs:
   R-CMD-check:
     runs-on: ${{ matrix.config.os }}
@@ -47,6 +49,8 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           brew install jags
+          mkdir -p /usr/local/libexec/jags-terminal
+          cp /usr/local/bin/jags /usr/local/libexec/jags-terminal
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'

From 593ac2c9e7ee7107d5651fa1983fc81a965a1800 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:06:01 -0700
Subject: [PATCH 53/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 00bb0a8..f773c9c 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -49,7 +49,7 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           brew install jags
-          mkdir -p /usr/local/libexec/jags-terminal
+          sudo mkdir -p /usr/local/libexec/jags-terminal
           cp /usr/local/bin/jags /usr/local/libexec/jags-terminal
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection

From d270bce0500194e42d43017088c4fa4d21f1b69d Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:08:44 -0700
Subject: [PATCH 54/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index f773c9c..a5a91d3 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -50,7 +50,7 @@ jobs:
         run: |
           brew install jags
           sudo mkdir -p /usr/local/libexec/jags-terminal
-          cp /usr/local/bin/jags /usr/local/libexec/jags-terminal
+          sudo cp /usr/local/bin/jags /usr/local/libexec/jags-terminal
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'

From 8369a257ef10f435adf7891f34f5a5d12267c722 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:12:54 -0700
Subject: [PATCH 55/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index a5a91d3..c6ef113 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -11,8 +11,6 @@ on:
 
 name: R-CMD-check
 
-permissions: write-all
-
 jobs:
   R-CMD-check:
     runs-on: ${{ matrix.config.os }}

From 80c71f5ebd2dfcea8aab6f572370f0cc0043b60d Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:20:54 -0700
Subject: [PATCH 56/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 1 +
 1 file changed, 1 insertion(+)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index feac1e1..ef5843a 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -9,6 +9,7 @@ test_that("test", {
 print(runjags::findjags())
 print(runjags::runjags.getOption("jagspath"))
 
+print(runjags::testjags())
 
 test_that("test", {
 

From 85c5556a6f50e29da2bacad3b968216df6a41218 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:25:56 -0700
Subject: [PATCH 57/77] f

---
 .github/workflows/r_command_check.yaml | 1 +
 tests/testthat/test-01-xx.R            | 1 -
 2 files changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index c6ef113..c0ff935 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -49,6 +49,7 @@ jobs:
           brew install jags
           sudo mkdir -p /usr/local/libexec/jags-terminal
           sudo cp /usr/local/bin/jags /usr/local/libexec/jags-terminal
+          ls /usr/local/libexec/jags-terminal
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'
diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index ef5843a..feac1e1 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -9,7 +9,6 @@ test_that("test", {
 print(runjags::findjags())
 print(runjags::runjags.getOption("jagspath"))
 
-print(runjags::testjags())
 
 test_that("test", {
 

From 16f6969f6f4b6ec48b72abd00f2782f660f579fd Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:29:52 -0700
Subject: [PATCH 58/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index c0ff935..0609147 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -48,7 +48,7 @@ jobs:
         run: |
           brew install jags
           sudo mkdir -p /usr/local/libexec/jags-terminal
-          sudo cp /usr/local/bin/jags /usr/local/libexec/jags-terminal
+          sudo cp /usr/local/bin/jags/ /usr/local/libexec/jags-terminal/
           ls /usr/local/libexec/jags-terminal
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection

From 31dd9c10f3d7efc2eeecef6d579fdc571e8a8f68 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:35:44 -0700
Subject: [PATCH 59/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 0609147..4fdfe47 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -47,9 +47,9 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           brew install jags
-          sudo mkdir -p /usr/local/libexec/jags-terminal
-          sudo cp /usr/local/bin/jags/ /usr/local/libexec/jags-terminal/
-          ls /usr/local/libexec/jags-terminal
+          sudo mkdir -p /usr/local/libexec
+          sudo cp -r /usr/local/bin/jags /usr/local/libexec/jags-terminal
+          ls /usr/local/libexec
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'

From d0cbae215fedd670a58662a41a5aeecaf555bdaa Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:39:41 -0700
Subject: [PATCH 60/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 4fdfe47..421d465 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -49,7 +49,7 @@ jobs:
           brew install jags
           sudo mkdir -p /usr/local/libexec
           sudo cp -r /usr/local/bin/jags /usr/local/libexec/jags-terminal
-          ls /usr/local/libexec
+          ls /usr/local/libexec/jags-terminal
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'

From 076dc305a146a70c975135dac25def0457768038 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:43:02 -0700
Subject: [PATCH 61/77] t

---
 .github/workflows/r_command_check.yaml | 1 -
 tests/testthat/test-01-xx.R            | 1 +
 2 files changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 421d465..2f500a2 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -49,7 +49,6 @@ jobs:
           brew install jags
           sudo mkdir -p /usr/local/libexec
           sudo cp -r /usr/local/bin/jags /usr/local/libexec/jags-terminal
-          ls /usr/local/libexec/jags-terminal
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'
diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index feac1e1..0f36f1d 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -8,6 +8,7 @@ test_that("test", {
 
 print(runjags::findjags())
 print(runjags::runjags.getOption("jagspath"))
+print(runjags::testjags())
 
 
 test_that("test", {

From c93be5825d818d772b5afd68a6448c6329d840c4 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:46:42 -0700
Subject: [PATCH 62/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 2f500a2..066a82d 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,9 +46,8 @@ jobs:
       - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
-          brew install jags
-          sudo mkdir -p /usr/local/libexec
-          sudo cp -r /usr/local/bin/jags /usr/local/libexec/jags-terminal
+          sudo apt-get update -qq
+          sudo apt-get install jags
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'

From df23d556bde670f7dbf4b8b3208340a01a7435eb Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 10:59:11 -0700
Subject: [PATCH 63/77] g

---
 .github/workflows/r_command_check.yaml | 3 +--
 DESCRIPTION                            | 1 +
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 066a82d..bb7ce35 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,8 +46,7 @@ jobs:
       - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
-          sudo apt-get update -qq
-          sudo apt-get install jags
+          brew install jags
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'
diff --git a/DESCRIPTION b/DESCRIPTION
index 8cc4db9..c82d803 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -16,6 +16,7 @@ Suggests:
   knitr,
   rmarkdown,
   testthat
+Remotes: ku-awdc/runjags#4
 SystemRequirements: JAGS 4.x.y
 Encoding: UTF-8
 RoxygenNote: 7.2.3

From 170d0519be6b662f6dd9a6f8a7de364e8fbff54c Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 11:21:50 -0700
Subject: [PATCH 64/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index 0f36f1d..f6c9736 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -6,9 +6,9 @@ test_that("test", {
   
 })
 
-print(runjags::findjags())
-print(runjags::runjags.getOption("jagspath"))
-print(runjags::testjags())
+message(runjags::findjags())
+message(runjags::runjags.getOption("jagspath"))
+message(runjags::testjags())
 
 
 test_that("test", {

From 55172afcd33b6599c0b1cd2a85b5d9a2aa45c206 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 11:23:01 -0700
Subject: [PATCH 65/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index f6c9736..e3c0853 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -9,7 +9,7 @@ test_that("test", {
 message(runjags::findjags())
 message(runjags::runjags.getOption("jagspath"))
 message(runjags::testjags())
-
+stop("FUCK")
 
 test_that("test", {
 

From 910128e533d9403a68562e368d31acef9802aec9 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 11:26:25 -0700
Subject: [PATCH 66/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index e3c0853..e3d1388 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -6,10 +6,10 @@ test_that("test", {
   
 })
 
-message(runjags::findjags())
-message(runjags::runjags.getOption("jagspath"))
-message(runjags::testjags())
-stop("FUCK")
+warning(runjags::findjags())
+warning(runjags::runjags.getOption("jagspath"))
+
+stop(runjags::testjags())
 
 test_that("test", {
 

From d0c9829c1ef4c31a36b010789a89eec30e7c761b Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 11:32:13 -0700
Subject: [PATCH 67/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index bb7ce35..a220ee9 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,7 +46,8 @@ jobs:
       - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
-          brew install jags
+          curl --locationhttps://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /JAGS-latest.exe
+
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection
         if: runner.os == 'Windows'

From 6b099d41a9d8a13c05f845e6e7c8bc4fcdfeaa70 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 11:34:36 -0700
Subject: [PATCH 68/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index a220ee9..e5ddbe6 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,7 +46,7 @@ jobs:
       - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
-          curl --locationhttps://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /JAGS-latest.exe
+          curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /JAGS-latest.exe
 
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection

From e55f6ef446eb4fd844b294e102c2cd2c58f51579 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 11:38:46 -0700
Subject: [PATCH 69/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index e5ddbe6..fcba8fb 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,7 +46,7 @@ jobs:
       - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
-          curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /JAGS-latest.exe
+          sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /JAGS-latest.exe
 
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection

From e4d02d0cd27b3bd2e21e5e990c7254353836ea69 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 11:46:15 -0700
Subject: [PATCH 70/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index fcba8fb..6f7d838 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,7 +46,7 @@ jobs:
       - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
-          sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /JAGS-latest.exe
+          sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o usr/local/JAGS-latest.exe
 
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection

From 330f04fb338c0a93934cb90f176d9ac661f067c0 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 11:50:58 -0700
Subject: [PATCH 71/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 6f7d838..361a00e 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,7 +46,7 @@ jobs:
       - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
-          sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o usr/local/JAGS-latest.exe
+          sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /usr/local/JAGS-latest.exe
 
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection

From 9e0ccb8bb6cfb4ee18d2c2a55d38e3beba2dea7e Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 11:59:08 -0700
Subject: [PATCH 72/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 361a00e..0aa68f3 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,7 +46,7 @@ jobs:
       - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
-          sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /usr/local/JAGS-latest.exe
+          sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /usr/local/JAGS-latest.pkg
 
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection

From 2fc81b36766faf418c633e17cf35f9b4f08321c5 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 12:09:09 -0700
Subject: [PATCH 73/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 0aa68f3..48c5c2b 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -47,6 +47,7 @@ jobs:
         if: runner.os == 'macOS'
         run: |
           sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /usr/local/JAGS-latest.pkg
+          sudo installer -pkg /usr/local/JAGS-latest.pkg -target /usr/local/bin/
 
           
       - name: Install system dependencies on Windows # the --location flag is needed to allow URI redirection

From 85aaa8e9b77284542cdc1b3f5b553ec271d0bb48 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 12:16:29 -0700
Subject: [PATCH 74/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 48c5c2b..400f6b6 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,7 +46,7 @@ jobs:
       - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
-          sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/ -o /usr/local/JAGS-latest.pkg
+          sudo curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/JAGS-4.3.1.pkg/download -o /usr/local/JAGS-latest.pkg
           sudo installer -pkg /usr/local/JAGS-latest.pkg -target /usr/local/bin/
 
           

From fd73245eb51553fe0b52d8c84e1be6979f405409 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 12:22:42 -0700
Subject: [PATCH 75/77] Update r_command_check.yaml

---
 .github/workflows/r_command_check.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/r_command_check.yaml b/.github/workflows/r_command_check.yaml
index 400f6b6..34cf241 100644
--- a/.github/workflows/r_command_check.yaml
+++ b/.github/workflows/r_command_check.yaml
@@ -46,7 +46,7 @@ jobs:
       - name: Install system dependencies on MacOS
         if: runner.os == 'macOS'
         run: |
-          sudo curl https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/JAGS-4.3.1.pkg/download -o /usr/local/JAGS-latest.pkg
+          sudo curl --location https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Mac%20OS%20X/JAGS-4.3.1.pkg -o /usr/local/JAGS-latest.pkg
           sudo installer -pkg /usr/local/JAGS-latest.pkg -target /usr/local/bin/
 
           

From 3c4afd55c28d2f34fed47d67aa32152d5746dc57 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 12:27:57 -0700
Subject: [PATCH 76/77] Update DESCRIPTION

---
 DESCRIPTION | 1 -
 1 file changed, 1 deletion(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index c82d803..8cc4db9 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -16,7 +16,6 @@ Suggests:
   knitr,
   rmarkdown,
   testthat
-Remotes: ku-awdc/runjags#4
 SystemRequirements: JAGS 4.x.y
 Encoding: UTF-8
 RoxygenNote: 7.2.3

From 192706ba799c973ecbe0de0ddd679a4d013ad2e6 Mon Sep 17 00:00:00 2001
From: juniperlsimonis <dapperstats@gmail.com>
Date: Fri, 14 Apr 2023 12:28:45 -0700
Subject: [PATCH 77/77] Update test-01-xx.R

---
 tests/testthat/test-01-xx.R | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/tests/testthat/test-01-xx.R b/tests/testthat/test-01-xx.R
index e3d1388..dc21066 100644
--- a/tests/testthat/test-01-xx.R
+++ b/tests/testthat/test-01-xx.R
@@ -6,10 +6,10 @@ test_that("test", {
   
 })
 
-warning(runjags::findjags())
-warning(runjags::runjags.getOption("jagspath"))
+message(runjags::findjags())
+message(runjags::runjags.getOption("jagspath"))
 
-stop(runjags::testjags())
+message(runjags::testjags())
 
 test_that("test", {