diff --git a/cellset_extraction.R b/cellset_extraction.R index 8c815ae..64f291f 100644 --- a/cellset_extraction.R +++ b/cellset_extraction.R @@ -43,7 +43,7 @@ get_cellset_cell_ids <- #' Get the cell_ids for many cellsets #' #' The cellset coordinates follow the convention shown in get_cellset_cell_ids, -#' so if you want the cell_ids of louvain clusters 13 and 14, you should input +#' so if you want the cell_ids of louvain clusters 12 and 13, you should input #' list(c(1, 13), c(1,14)). #' #' @param cellsets list parsed json cellset object diff --git a/remove_cellsets.Rmd b/remove_cellsets.Rmd index bffefa0..a2e79d9 100644 --- a/remove_cellsets.Rmd +++ b/remove_cellsets.Rmd @@ -32,7 +32,7 @@ cellsets <- jsonlite::read_json(file.path(data_dir, "cellsets.json")) Create list of cellset coordinates to extract. Follow `get_cellset_cell_ids` docs -for reference. In this example, we will remove louvain clusters (index 1) 13 and 14, +for reference. In this example, we will remove louvain clusters (index 1) 12 and 13, ```{r} cellsets_to_extract <- list(c(1,13), c(1,14))