From ca69667c9e417e9c57255b86a29fe8624e10c4a2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Steffen=20M=C3=B6ller?= Date: Sun, 10 Mar 2019 14:07:12 +0100 Subject: [PATCH] Update README.md Added a bit more of an instruction and background. --- DebianMed/README.md | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/DebianMed/README.md b/DebianMed/README.md index 4967029..314f478 100644 --- a/DebianMed/README.md +++ b/DebianMed/README.md @@ -1,11 +1,11 @@ # biotoolsConnect : Debian Med Adaptor for content exchange between bio.tools and Debian Med. -Run this script on any Linux machine with a psql client. In case you are lacking any such machine but you are a member of the Debian Med team you can do: - -rsync edam.sh alioth.debian.org: -ssh alioth.debian.org -./edam.sh - - -The script queries the Debian "database of everything" (UDD) and retrieves, for all bioinformatics tools inside Debian, information relevant to bio.tools, including EDAM annotations. The UDD itself includes information from the debian/upstream/edam files which hold EDAM annotation on Debian packages. \ No newline at end of file +The script queries the Debian "database of everything" (UDD) and retrieves, for all bioinformatics tools inside Debian, information relevant to bio.tools, including EDAM annotations. The UDD itself includes information from the files: + * debian/upstream/edam: holds EDAM annotation on Debian packages. + * debian/upstream/metadata: assigns Debian packages to Registry like bio.tools + +Run this script on any Linux machine with a psql client and redirect into a file: +``` +./edam.sh -mj > edam.json +```