Skip to content

Installation fails for the version 6c63051c #1

@UTNK

Description

@UTNK

Dear Dr. Chaoyue Liu,

I tried installing the latest version of evolCCM and found it fails because of cyclic namespace dependency.
I could install the previous version ebd4beab3fdd980af7925b57f3e61880aab53fe2, so it will be caused by the latest update of the codes.

This is my environment:

$ conda create -n r_env_compatible r-base=4.3 r-devtools r-ape -c conda-forge
$ conda activate r_env_compatible

The installation output for the latest version

> devtools::install_github("beiko-lab/evolCCM@6c63051c3f52b3523892a78ca2c4e8cb9a2ac87a")
Downloading GitHub repo beiko-lab/evolCCM@6c63051c3f52b3523892a78ca2c4e8cb9a2ac87a
── R CMD build ────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file/tmp/RtmpTHN7jp/remotes13b0f31321978c/beiko-lab-evolCCM-6c63051/DESCRIPTION’ (873ms)
─  preparingevolCCM:checking DESCRIPTION meta-informationchecking for LF line-endings in source and make files and shell scriptschecking for empty or unneeded directories
   OmittedLazyDatafrom DESCRIPTIONbuildingevolCCM_0.1.0.tar.gzInstalling package into/mnt2/home/konno/R/x86_64-conda-linux-gnu-library/4.3’
(aslibis unspecified)
* installing *source* packageevolCCM...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed forevolCCMin loadNamespace(package, lib.loc):
 cyclic namespace dependency detected when loadingevolCCM’, already loadingevolCCMSkipping install of 'evolCCM' from a github remote, the SHA1 (6c63051c) has not changed since last install.
  Use `force = TRUE` to force installation
Error : package or namespace load failed forevolCCMin loadNamespace(package, lib.loc):
 cyclic namespace dependency detected when loadingevolCCM’, already loadingevolCCMError: unable to load R code in packageevolCCMExecution halted
ERROR: lazy loading failed for packageevolCCM* removing/mnt2/home/konno/R/x86_64-conda-linux-gnu-library/4.3/evolCCMWarning message:
In i.p(...) :
  installation of package/tmp/RtmpTHN7jp/file13b0f36ba3c010/evolCCM_0.1.0.tar.gzhad non-zero exit status

The installation output for the previous version

> devtools::install_github("beiko-lab/evolCCM@ebd4beab3fdd980af7925b57f3e61880aab53fe2")
Downloading GitHub repo beiko-lab/evolCCM@ebd4beab3fdd980af7925b57f3e61880aab53fe2
── R CMD build ────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file/tmp/RtmpTHN7jp/remotes13b0f3c18f59b/beiko-lab-evolCCM-ebd4bea/DESCRIPTION’ (337ms)
─  preparingevolCCM:checking DESCRIPTION meta-information ...checking for LF line-endings in source and make files and shell scriptschecking for empty or unneeded directories
   OmittedLazyDatafrom DESCRIPTIONbuildingevolCCM_0.1.0.tar.gzInstalling package into/mnt2/home/konno/R/x86_64-conda-linux-gnu-library/4.3’
(aslibis unspecified)
* installing *source* packageevolCCM...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (evolCCM)
* ```

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions