From e1952240995f087720f88b114ebf7cbe340a79e5 Mon Sep 17 00:00:00 2001 From: WeizhongTu Date: Fri, 22 Jan 2016 09:03:46 +0800 Subject: [PATCH 1/2] fix zsh java classpath error java -cp dist/*:lib/* aamtool.ReactionDecoder -Q SMI -q "CC(O)CC(=O)OC(C)CC(O)=O.O[H]>>[H]OC(=O)CC(C)O.CC(O)CC(O)=O" -g -j AAM -f TEXT zsh: no matches found: dist/*:lib/* see: http://stackoverflow.com/a/10230446/2714931 --- README.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.txt b/README.txt index 943c2ee00..729681fa4 100644 --- a/README.txt +++ b/README.txt @@ -16,7 +16,7 @@ Annotate Reaction using SMILES or -java -cp dist/*:lib/* aamtool.ReactionDecoder -Q SMI -q "CC(O)CC(=O)OC(C)CC(O)=O.O[H]>>[H]OC(=O)CC(C)O.CC(O)CC(O)=O" -g -j AAM -f TEXT +java -cp "dist/*:lib/*" aamtool.ReactionDecoder -Q SMI -q "CC(O)CC(=O)OC(C)CC(O)=O.O[H]>>[H]OC(=O)CC(C)O.CC(O)CC(O)=O" -g -j AAM -f TEXT Annotate Reaction using SMILES From 8c384c3b8608a5c30e80752545c1a05d5bf908c5 Mon Sep 17 00:00:00 2001 From: WeizhongTu Date: Fri, 22 Jan 2016 09:06:14 +0800 Subject: [PATCH 2/2] fix zsh java classpath error java -cp dist/*:lib/* aamtool.ReactionDecoder -Q SMI -q "CC(O)CC(=O)OC(C)CC(O)=O.O[H]>>[H]OC(=O)CC(C)O.CC(O)CC(O)=O" -g -j AAM -f TEXT zsh: no matches found: dist/*:lib/* --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index c0c63e4c2..493cf2f03 100644 --- a/README.md +++ b/README.md @@ -13,7 +13,7 @@ ``` ``` - java -cp dist/*:lib/* aamtool.ReactionDecoder -Q SMI -q "CC(O)CC(=O)OC(C)CC(O)=O.O[H]>>[H]OC(=O)CC(C)O.CC(O)CC(O)=O" -g -j AAM -f TEXT + java -cp "dist/*:lib/*" aamtool.ReactionDecoder -Q SMI -q "CC(O)CC(=O)OC(C)CC(O)=O.O[H]>>[H]OC(=O)CC(C)O.CC(O)CC(O)=O" -g -j AAM -f TEXT ``` ####Annotate Reaction using SMILES