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Reads doubled when using bamtofastq #167

@jonathan-bravo

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@jonathan-bravo

Hello,

I am working with nanopore data, and after we do a host removal step we convert the resulting bam file to a fastq file for further processing. When using bedtools bamtofastq -i <BAM> -fq <OUT.fastq> I noticed that the reads are exactly doubled.

Cheers,
Johnny

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