importRankings ERROR

[Nocooper]

when I use function importRankings("hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather") import feather file meet error

Using the column 'A1BG' as feature index for the ranking database.
Error: NotImplemented: Support for codec 'zstd' not built
In order to read this file, you will need to reinstall arrow with additional features enabled.
Set one of these environment variables before installing:

 * Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd')
 * Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd')

See https://arrow.apache.org/docs/r/articles/install.html for details

Feather File download from ：https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/refseq_r80/mc_v10_clust/gene_based/hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather

> sessionInfo()
R version 4.2.1 (2022-06-23)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: Ubuntu 22.04 LTS

Matrix products: default
BLAS/LAPACK: /home/yxwang/.conda/envs/R_env/lib/libopenblasp-r0.3.21.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=zh_CN.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=zh_CN.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=zh_CN.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=zh_CN.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] arrow_10.0.0      data.table_1.14.4 RcisTarget_1.16.0

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.9                  lattice_0.20-45            
 [3] png_0.1-7                   Biostrings_2.64.1          
 [5] assertthat_0.2.1            digest_0.6.30              
 [7] utf8_1.2.2                  mime_0.12                  
 [9] R6_2.5.1                    GenomeInfoDb_1.32.4        
[11] stats4_4.2.1                RSQLite_2.2.18             
[13] httr_1.4.4                  pillar_1.8.1               
[15] sparseMatrixStats_1.8.0     zlibbioc_1.42.0            
[17] rlang_1.0.6                 annotate_1.74.0            
[19] blob_1.2.3                  S4Vectors_0.34.0           
[21] R.utils_2.12.1              R.oo_1.25.0                
[23] Matrix_1.5-1                AUCell_1.18.1              
[25] RCurl_1.98-1.9              bit_4.0.4                  
[27] shiny_1.7.3                 DelayedArray_0.22.0        
[29] compiler_4.2.1              httpuv_1.6.6               
[31] pkgconfig_2.0.3             BiocGenerics_0.42.0        
[33] htmltools_0.5.3             tidyselect_1.2.0           
[35] KEGGREST_1.36.3             SummarizedExperiment_1.26.1
[37] tibble_3.1.8                GenomeInfoDbData_1.2.8     
[39] IRanges_2.30.1              matrixStats_0.62.0         
[41] XML_3.99-0.12               fansi_1.0.3                
[43] crayon_1.5.2                dplyr_1.0.10               
[45] later_1.3.0                 bitops_1.0-7               
[47] R.methodsS3_1.8.2           grid_4.2.1                 
[49] xtable_1.8-4                GSEABase_1.58.0            
[51] lifecycle_1.0.3             DBI_1.1.3                  
[53] magrittr_2.0.3              graph_1.74.0               
[55] cli_3.4.1                   cachem_1.0.6               
[57] XVector_0.36.0              promises_1.2.0.1           
[59] DelayedMatrixStats_1.18.2   ellipsis_0.3.2             
[61] generics_0.1.3              vctrs_0.5.0                
[63] tools_4.2.1                 bit64_4.0.5                
[65] Biobase_2.56.0              glue_1.6.2                 
[67] purrr_0.3.5                 MatrixGenerics_1.8.1       
[69] fastmap_1.1.0               AnnotationDbi_1.58.0       
[71] BiocManager_1.30.19         GenomicRanges_1.48.0       
[73] memoise_2.0.1              

> packageVersion("RcisTarget")
[1] ‘1.16.0’

[s-aibar]

Dear Nocooper,

That error is probably due to the recent updates in the databases, the column order was changed. That should be corrected automatically in the newer versions of RcisTarget, but if you don't want to update the package, you can indicate the column to take (probably 'features') as argument to the function.