Logguru version error + fix #79
Description
RuleException:
TypeError in file /lisc/scratch/neurobiology/zimmer/schaar/Behavior/High_Res_Population/elpiniki_test_final/Snakefile, line 285:
init() got an unexpected keyword argument 'patchers'
File "/lisc/scratch/neurobiology/zimmer/schaar/Behavior/High_Res_Population/elpiniki_test_final/Snakefile", line 296, in __rule_chemotaxis_analysis
File "/lisc/scratch/neurobiology/zimmer/schaar/Behavior/High_Res_Population/elpiniki_test_final/Snakefile", line 285, in get_video_resolution
File "/lisc/scratch/neurobiology/zimmer/autoscope/code/imutils/imutils/scopedatamanager/microscope_data_reader.py", line 38, in init
File "/lisc/scratch/neurobiology/zimmer/autoscope/code/imutils/imutils/loghelper/quick_loguru.py", line 23, in init
File "/lisc/scratch/neurobiology/zimmer/.conda/envs/autoscope_behaviour_shared/lib/python3.8/concurrent/futures/thread.py", line 57, in run
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2025-03-10T155345.390270.snakemake.log
fix:
pip install --upgrade loguru