For our libraries we use the pattern PSR-4.
In short, instead of the internal classes be located at ./includes and each file having the "Embed" prefix, we should create a "embedpress" folder inside the library dir, and rename the files:
includes/EmbedPress.php --> library/embedpress/Core.php
includes/EmbedPressLoader.php --> library/embedpress/Loader.php,
etc.
Another change will be to use PHP namespaces for that classes:
Alledia\EmbedPress\Loader for example, instead of EmbedPressLoader
That allow us to use the composer autoloader to load the classes without the need to include each one.