Skip to content

v2.4 failed run #17

@Kaddea

Description

@Kaddea

Hi,
running version 2.4 with python 3(.11).
HLA calling gets stuck during/after the 2nd iteration of non-class determination with the output below.

Thanks for any help :)

The digital haplotype is written into [filename]-ClassI-nonclass.digitalhaplotype3
Took 0.5041732788085938 seconds
Traceback (most recent call last):
File "seq2HLA.py", line 791, in
main()
File "seq2HLA.py", line 786, in main
pipe.run()
File "seq2HLA.py", line 152, in run
self.call_HLA(
File "seq2HLA.py", line 304, in call_HLA
if fourDigit_solutions1[locus] > 1:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
TypeError: '>' not supported between instances of 'str' and 'int'

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions