Confidence score and p-value

[yuanfeng719]

Hi,

I am currently analyzing the seq2HLA outputs, and I have a question about the definition of the confidence scores. Are they equal to Pvalues or 1 - Pvalues? Is this value the higher the better?

I really appreciate your help!!

Yuan

[farzadhallaji]

the confidence is 1 minus the 2nd largest p-value, and the credibility is the largest p-value I guess