Run Unit Tests

Updates API and tests with recently added input and output objects (#… #396

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Run time

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Job	Run time
run_ruff / ruff	6s
test (ubuntu-latest, 3.9)	3m 14s
test (ubuntu-latest, 3.13)	3m 11s
test (windows-latest, 3.9)	4m 19s
test (windows-latest, 3.13)	5m 14s
test (macos-13, 3.9)	7m 12s
test (macos-13, 3.13)	5m 30s
	28m 46s