From ce7ec579bec893dbf397d0c378c8a0982d06ec7a Mon Sep 17 00:00:00 2001
From: wumirose <wumirose@gmail.com>
Date: Thu, 25 Sep 2025 17:40:15 -0400
Subject: [PATCH] edited dockerfile

---
 Dockerfile | 63 ++++++++++++++++++++++++++++++++++++++++++++----------
 1 file changed, 52 insertions(+), 11 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 13273de..409718b 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,5 +1,4 @@
-# leverage the renci python base image
-#FROM ghcr.io/translatorsri/renci-python-image:3.12.4
+# Build from a github repo
 FROM python:3.12-slim
 
 ENV DEBIAN_FRONTEND=noninteractive \
@@ -7,20 +6,62 @@ ENV DEBIAN_FRONTEND=noninteractive \
     PIP_DEFAULT_TIMEOUT=100 \
     PIP_RETRIES=5
 
-# Create and set working directory
+# Set working directory
 WORKDIR /repo
 
-COPY requirements.txt .
-
-# get the latest code
+# Install build tools and git
 RUN apt-get update && \
-    apt-get install -y --no-install-recommends build-essential && \
-    pip install --upgrade pip setuptools && \
-    pip install -r requirements.txt && \
-    rm -rf /var/lib/apt/lists/* ~/.cache
+    apt-get install -y --no-install-recommends build-essential git && \
+    rm -rf /var/lib/apt/lists/*
+
+# Always fetch the latest code from main
+RUN git clone --branch main https://github.com/RENCI-NER/pred-mapping.git .
 
-COPY . .
+# Install Python dependencies
+RUN pip install --upgrade pip setuptools && \
+    pip install -r requirements.txt
 
 EXPOSE 6380
 
 ENTRYPOINT ["bash", "main.sh"]
+
+
+# Build with local Files:
+## leverage the renci python base image
+##FROM ghcr.io/translatorsri/renci-python-image:3.12.4
+#FROM python:3.12-slim
+#
+#ENV DEBIAN_FRONTEND=noninteractive \
+#    PIP_NO_CACHE_DIR=1 \
+#    PIP_DEFAULT_TIMEOUT=100 \
+#    PIP_RETRIES=5
+#
+## Create and set working directory
+#WORKDIR /repo
+#
+#COPY requirements.txt .
+#
+## get the latest code
+#RUN apt-get update && \
+#    apt-get install -y --no-install-recommends build-essential && \
+#    pip install --upgrade pip setuptools && \
+#    pip install -r requirements.txt && \
+#    rm -rf /var/lib/apt/lists/* ~/.cache
+#
+#COPY . .
+#
+#EXPOSE 6380
+#
+#ENTRYPOINT ["bash", "main.sh"]
+
+
+#run
+#docker run --rm \
+#  --platform linux/amd64 \
+#  -p 6380:6380
+#  -e LLM_API_URL=https://healpaca.apps.renci.org/api/generate \
+#  -e CHAT_MODEL=HEALpaca-2.0 \
+#  -e EMBEDDING_URL=https://healpaca.apps.renci.org/api/embeddings \
+#  -e EMBEDDING_MODEL=nomic-embed-text \
+#  containers.renci.org/translator-dev/pred-mapping:latest
+