From 08beb39e64fa1f6c2fdf804eeac5ae9d90aa1a94 Mon Sep 17 00:00:00 2001
From: nisar <nisar.n.k@gmail.com>
Date: Wed, 2 Jul 2025 21:36:11 -0400
Subject: [PATCH 1/5] Replace Black and Flake8 with Ruff

---
 .flake8          | 12 ------------
 requirements.txt |  1 +
 2 files changed, 1 insertion(+), 12 deletions(-)
 delete mode 100644 .flake8

diff --git a/.flake8 b/.flake8
deleted file mode 100644
index f9b52a9..0000000
--- a/.flake8
+++ /dev/null
@@ -1,12 +0,0 @@
-[flake8]
-exclude =
-    .git,
-    __pycache__,
-    build,
-    dist,
-    versioneer.py,
-    csxtools/doc/conf.py
-    *.ipynb_checkpoints,
-    
-max-line-length = 140
-ignore = E203, W503
\ No newline at end of file
diff --git a/requirements.txt b/requirements.txt
index 24ce15a..a6b1da2 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1 +1,2 @@
 numpy
+ruff>=0.4.0

From db3735f8ccf4e660a62beceba3e2b91367660dea Mon Sep 17 00:00:00 2001
From: nisar <nisar.n.k@gmail.com>
Date: Wed, 2 Jul 2025 22:02:53 -0400
Subject: [PATCH 2/5] replace .github/workflows/flake8.yml with
 .github/workflows/ruff.yml

---
 .github/workflows/{flake8.yml => ruff.yml} | 12 ++++--------
 1 file changed, 4 insertions(+), 8 deletions(-)
 rename .github/workflows/{flake8.yml => ruff.yml} (51%)

diff --git a/.github/workflows/flake8.yml b/.github/workflows/ruff.yml
similarity index 51%
rename from .github/workflows/flake8.yml
rename to .github/workflows/ruff.yml
index 528bc64..1bcdd96 100644
--- a/.github/workflows/flake8.yml
+++ b/.github/workflows/ruff.yml
@@ -1,4 +1,4 @@
-name: Check Code Style - FLAKE8
+name: Check Code Style - RUFF
 
 on: [push, pull_request]
 
@@ -12,12 +12,8 @@ jobs:
           python-version: "3.10"
       - name: Install Dependencies
         run: |
-          # These packages are installed in the base environment but may be older
-          # versions. Explicitly upgrade them because they often create
-          # installation problems if out of date.
           python -m pip install --upgrade pip setuptools numpy
-
-          pip install flake8
-      - name: Run flake8
+          pip install ruff
+      - name: Run ruff
         run: |
-          flake8
+          ruff .

From 95f6ed7c9f8ae46d9649a40255e15f2ea808793c Mon Sep 17 00:00:00 2001
From: nisar <nisar.n.k@gmail.com>
Date: Wed, 2 Jul 2025 22:08:36 -0400
Subject: [PATCH 3/5] Bug fix in .github/workflows/ruff.yml

---
 .github/workflows/ruff.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/ruff.yml b/.github/workflows/ruff.yml
index 1bcdd96..599d4cf 100644
--- a/.github/workflows/ruff.yml
+++ b/.github/workflows/ruff.yml
@@ -15,5 +15,4 @@ jobs:
           python -m pip install --upgrade pip setuptools numpy
           pip install ruff
       - name: Run ruff
-        run: |
-          ruff .
+        run: ruff check .

From 7e9ab6bc18a2b5c54e7d008b410264022b1f1f3a Mon Sep 17 00:00:00 2001
From: nisar <nisar.n.k@gmail.com>
Date: Thu, 3 Jul 2025 21:14:27 -0400
Subject: [PATCH 4/5] Update pyproject.toml to exclude 'examples' and other
 diectories like 'src' from Ruff checks

---
 pyproject.toml | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/pyproject.toml b/pyproject.toml
index 145d9bf..c058f1c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,3 +6,12 @@ requires = [
     "versioneer[toml]>=0.28"
 ]
 build-backend = "setuptools.build_meta"
+[tool.ruff]
+exclude = [
+    "examples",
+    "doc",
+    "build",
+    "dist",
+    "csxtools.egg-info",
+    "__pycache__"
+]

From 753d44b33a028ebcb2a4879a1f9d8b15445fce9d Mon Sep 17 00:00:00 2001
From: nisar <nisar.n.k@gmail.com>
Date: Thu, 10 Jul 2025 11:39:47 -0400
Subject: [PATCH 5/5] fixed issue with method browse_3Darray in
 csxtools/helpers/fastccd.py

---
 csxtools/helpers/fastccd.py | 13 ++-----------
 1 file changed, 2 insertions(+), 11 deletions(-)

diff --git a/csxtools/helpers/fastccd.py b/csxtools/helpers/fastccd.py
index 30277ca..9e0df48 100644
--- a/csxtools/helpers/fastccd.py
+++ b/csxtools/helpers/fastccd.py
@@ -13,7 +13,7 @@
 logger = logging.getLogger(__name__)
 
 
-def browse_3Darray(res, title="Frame"):  # , extra_scalar_dict=None):
+def browse_3Darray(res, fig, ax, im, title="Frame"):  # , extra_scalar_dict=None):
     """Widget for notebooks.  Sliding bar to browse 3D python array. Must plot using subplots method with 1 axes.
     res : 3D array with the first element being interated
 
@@ -21,24 +21,15 @@ def browse_3Darray(res, title="Frame"):  # , extra_scalar_dict=None):
     """
     N = len(res)
 
-    def view_image(i=0):
+    def view_image(i=0, fig = fig, ax = ax, im = im):
         im.set_data(res[i])
-        # if extra_scalar_dict is not None:
-        #    key = extra_scalr_dict.keys()[0]
-        #    values = extra_scalar_dict.values()
-
-        # if extra_scalar_dict is None:
-        #    ax.set_title(f'{title} {i} {key} {values[i]}')
-        # else:
         ax.set_title(f"{title} {i}")
         fig.canvas.draw_idle()
 
     interact(view_image, i=(0, N - 1))
 
-
 # FCCD specific stuff starts here
 
-
 def find_possible_darks(
     header,
     dark_gain,