add the step to do demultiplex for GBS data

[lilei1]

Type of issue

• Bug
• [Y] Feature request

---

Bugs

Have you looked at the wiki?

The wiki is located here

• Yes
• No

Which handler are you having trouble with?

Describe your problem

What is the error message being generated?

# Put your error message here

Copy the part of the config file used by this handler

#   Shared values go here

#   Handler-specific values go here

#   Dependency definitions go here

Has anyone else been able to replicate your error?

• Yes
• No

---

Feature requests

What new thing is being added?

• [ Y] New handler
• Modification to handler

Describe the changes made

Isolated individual samples based on the barcodes

Where does this fit in with the existing pipeline?

Before QC evaluation

List any dependencies that will be needed for this change

fastx_toolkit/0.0.14

Do you have code for this change?

• [ Y] Yes
• No

[mojaveazure]

Hi Li, do you have your code uploaded to GitHub or Gist so I can look at it?

[lilei1]

Hi, Paul.
This is Jeff's code
https://github.com/neyhartj/GBarleyS/blob/master/Pipeline_Scripts/run_fastx_barcode_splitter.sh
I used.
Thanks.
Best,
Li

On Mon, Mar 28, 2016 at 6:00 PM, Paul Hoffman notifications@github.com
wrote:

Hi Li, do you have your code uploaded to GitHub or Gist so I can look at
it?

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#17 (comment)

[mojaveazure]

Okay. I will look at this later.

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