diff --git a/readme.html b/README.md similarity index 56% rename from readme.html rename to README.md index fb03be4..a9cd694 100644 --- a/readme.html +++ b/README.md @@ -1,44 +1,41 @@ -
- -This model of cardiac sarcomere dynamics linked to calcium kinetics is implemented and +This model of cardiac sarcomere dynamics linked to calcium kinetics is implemented and modified for Neuron by Francois E. Gannier and Claire O. Malecot - from University of Tours - FRANCE - Physiologie des Cellules Cardiaques et Vasculaires - email address: francois.gannier@univ-tours.fr +from University of Tours - FRANCE +Physiologie des Cellules Cardiaques et Vasculaires +email address: francois.gannier@univ-tours.fr -It is based on the paper by : +It is based on the paper by : Negroni JA & Lascano EC (1996) A cardiac muscle model relating sarcomere -dynamics to calcium kinetics. J Mol Cell Cardio 28:915-929 [PubMed] +dynamics to calcium kinetics. *J Mol Cell Cardio* 28:915-929 [ [PubMed](http://www.ncbi.nlm.nih.gov/pubmed/8762031) ] this is a now classic model of contraction which has been added in some recent models (eg : kyoto model (2003), Okada model (2005)) -it uses a four-state combination to show the relation between C-Troponin, calcium, +it uses a four-state combination to show the relation between C-Troponin, calcium, cross-bridges and Force. -The orginal model was modified to allow several stimuli with self-chosen frequency. +The orginal model was modified to allow several stimuli with self-chosen frequency. (This allows to reproduce a staircase phenomenom) -To run the simulation auto-launch the model from modeldb or download +To run the simulation auto-launch the model from modeldb or download and extract the archive and then compile the mod files under: -unix/linux: ------------ -type nrnivmodl in the NegroniLascano folder and then -nrngui mosinit.hoc - -mswin: ------- -run mknrndll and then double click on mosinit.hoc +## unix/linux: +type `nrnivmodl` in the NegroniLascano folder and then +`nrngui mosinit.hoc` -MAC OS X: --------- +## mswin: +run `mknrndll` and then double click on `mosinit.hoc` -Drag and drop the NegroniLascano folder onto the mknrndll icon. Drag +## MAC OS X: +Drag and drop the NegroniLascano folder onto the mknrndll icon. Drag and drop the mosinit.hoc file onto the nrngui icon. Once the simulation starts it recreates a figure similar to Fig. 2 (shown as three -panels for clarity)& 3 of the original paper. +panels for clarity) & 3 of the original paper. + + + +--- -\ No newline at end of file +2025-06-02: Converted README to Markdown.-