Hi,
I'm using mg-rast-tool in order to download KO abundance at level1.
I ran as follows:
mg-abundant-functions.py --user myuser --passwd mypassword --token mykey --id "mgmxxxxxxx.3" --level level1 --source KO --evalue 5
I obtained the following counts:
Metabolism 48612
Genetic Information Processing 22250
Environmental Information Processing 13663
Cellular Processes 3482
Human Diseases 749
Organismal Systems 366
However, if I take a look to the same sample within the mg-rast web tool I found the following

As you can see the counts look different. Where is the problem? How should I do to get the same web page results?
Many thanks,
Valentina