Exception in thread "main" java.util.InputMismatchException

[danli349]

Hello,

I run

samtools view -H C1.FINAL.BAM | perl -ne 'if(/^@SQ.*?SN:(\w+)\s+LN:(\d+)/){print $1,"\t",$2,"\n"}' > genomeinfo/C1.FINAL.BAM
java -jar ~/HMMRATAC_V1.2.10_exe.jar -b C1.FINAL.BAM -i C1.FINAL.BAM.bai -g genomeinfo/C1.FINAL.BAM

But got this error:

Exception in thread "main" java.util.InputMismatchException
        at java.base/java.util.Scanner.throwFor(Scanner.java:939)
        at java.base/java.util.Scanner.next(Scanner.java:1594)
        at java.base/java.util.Scanner.nextInt(Scanner.java:2258)
        at java.base/java.util.Scanner.nextInt(Scanner.java:2212)
        at GenomeFileReaders.GenomeFileReader.<init>(GenomeFileReader.java:65)
        at HMMR_ATAC.Main_HMMR_Driver.main(Main_HMMR_Driver.java:165)

Can you please let me know how can I fix it?

Thanks a lot.