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Upgrade at some point for for MFDFA processing of EEG to parfor to speed up the processing, at the moment it is the most computationally heavy operation.
e.g. http://www.mathworks.com/help/distcomp/getting-started-with-parfor.html
Alternatively you could parallelize the file processing as well, as every file BDF is independent from each other. Or you could allocate each file to distributed workstations if you can use multiple workstations let's say during the night at the lab:
