diff --git a/scripts/make_new_vcf.sh b/scripts/make_new_vcf.sh index d3b107b..ef69d5a 100644 --- a/scripts/make_new_vcf.sh +++ b/scripts/make_new_vcf.sh @@ -78,7 +78,7 @@ NAME="$(basename ${BAM} $(extension ${BAM}))" (set -x; HAPCUT2 --fragments ${NAME}.extractHairs.txt --VCF ${VCF} --output ${NAME}.hapcut.txt --nf 1) -(set -x; python HapCUT22VCF.py ${NAME}.hapcut.txt ${NAME}.vcf ${VCF}) +(set -x; python HapCUT2VCF.py ${NAME}.hapcut.txt ${NAME}.vcf ${VCF}) (set -x; bgzip -c ${NAME}.vcf > ${NAME}.vcf.gz) (set -x; tabix -p vcf ${NAME}.vcf.gz)