Training stuck after loading 3d data

[CarinaL99]

Training stuck after loading 3d data

python train.py -net sam -mod sam_adpt -exp_name msa-3d-sam-btcv -sam_ckpt ./sam_vit_b_01ec64.pth -image_size 1024 -b 1 -dataset decathlon -thd True -chunk 1 -data_path /mnt/data/abdomen -num_sample 1

i run the program, but it gets stuck after loading the 3d data. How to solve it

[AmrinKareem]

Hi @CarinaL99 @WuJunde Does the 3D data have an associated dataset class? I couldn't find it in dataset.py.

[CarinaL99]

Hi @CarinaL99 @WuJunde Does the 3D data have an associated dataset class? I couldn't find it in dataset.py.

I just use BTCV dataset following the training 3d tutorial as README.md

[AmrinKareem]

Hi @CarinaL99 Did you solve the problem? I am facing the same problem too. My training is stuck after loading the 3D data. @WuJunde Can you please advise?
Please let me know. Thanks!

[visionbike]

I met this problem, chunk size should be > 1, I used 3 and it work well

[supercq123456]

@AmrinKareem @visionbike Have you successfully reproduced the BTCV dataset? It seems that the author's data loading code for the dataset has some issues?

[fantasioly]

@AmrinKareem @visionbike Have you successfully reproduced the BTCV dataset? It seems that the author's data loading code for the dataset has some issues?

I can train and validate, but the Dice score is only 0.3.