Not all command line options are described in the usage text

[lckarssen]

Not all command line options of text2fvf are explained in the usage message. These are the current option lists (see text2fvf_main.cpp):

    const char * const short_options = "i:o:c:s:r:2:3:4:t:RT:d:n:";
    const struct option long_options [] =
        {
            {"infile",    required_argument, NULL, 'i'},
            {"outfile",   required_argument, NULL, 'o'},
            {"skipcols",  required_argument, NULL, 'c'},
            {"skiprows",  required_argument, NULL, 's'},
            {"rownames",  required_argument, NULL, 'r'},
            {"cnrow",     required_argument, NULL, '2'},
            {"rnfile",    required_argument, NULL, '3'},
            {"cnfile",    required_argument, NULL, '4'},
            {"transpose", no_argument,       NULL, 't'},
            {"Rmatrix",   no_argument,       NULL, 'R'},
            {"outType",   required_argument, NULL, 'T'},
            {"datatype",  required_argument, NULL, 'd'},
            {"nanString", required_argument, NULL, 'n'},
            { NULL     ,  no_argument,       NULL,  0 }
        };

At at first glance, the rnfile, cnfile and nanString options are not documented in the usage string.