About input for manuscript-related analysis

[tzhu-bio]

Thanks for your Sei model.

I don't know what script generates these manuscript-related analysis input files. Is it only necessary to use 1_sequence_prediction.py, 2_raw_sc_score.py and _2_varianteffect sc_score.py to generate the input files needed for the manuscript? Or do I need some other operations?

Would you mind sharing the "sei_data/hg38.tilling.bed.randsort_predictions.h5.ipca_randomized_1000.npy" and " resources/seqclass_louvain_wgt.npy" files are generated by any script?

Looking forward to your reply!

[kathyxchen]

Hi @tzhu-bio thanks for your message. Can you email me at chen.kathleenm@gmail.com so I can give you more detailed information? Thanks!