Missing FeTS_CLI_Segment of the installed version

[amnmed09]

Hi sir,

I am working on segmentation of GBM cases. After exploring the documentation site, I noticed that the module FeTS_CLI_Segment, which is required for executing the segmentation, is missing from the bin folder of the installed version (FeTS 0.0.7). I tried to locate it, but to no avail. Could you please provide guidance on how to specifically install this module or command? Is there a separate installation process for it? I'm also curious to know if the absence of a GPU could be the reason it is not automatically installed. Your insights would be greatly appreciated.

Ayman

[sarthakpati]

Thank you for your interest in the FeTS Tool.

Have you tried the latest version of the Tool? https://github.com/FeTS-AI/Front-End#downloads

[amnmed09]

Hi Sarthak, I have tried it but the installation failed as it gives mean an error message indicating no cuda. Please let me know if I can install it without the need of GPU. Ayman

…

________________________________ From: Sarthak Pati ***@***.***> Sent: Friday, June 30, 2023 3:58 AM To: FeTS-AI/Front-End ***@***.***> Cc: Nada, Ayman ***@***.***>; Author ***@***.***> Subject: Re: [FeTS-AI/Front-End] Missing FeTS_CLI_Segment of the installed version (Issue #62) WARNING: This message has originated from an External Source. This may be a phishing expedition that can result in unauthorized access to our IT System. Please use proper judgment and caution when opening attachments, clicking links, or responding to this email. Have you tried the latest version of the Tool? https://github.com/FeTS-AI/Front-End#downloads — Reply to this email directly, view it on GitHub<#62 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AZK24BAI7SV5TAHMKGTR2DDXN2IK5ANCNFSM6AAAAAAZZATFEM>. You are receiving this because you authored the thread.Message ID: ***@***.***>

[sarthakpati]

Can you provide the exact steps you followed and the error message?

[amnmed09]

Here you are: (base) ***@***.***:~/Downloads$ chmod +x FeTS_0.0.9_Installer.bin (base) ***@***.***:~/Downloads$ ./FeTS_0.0.9_Installer.bin --target /media/ayman/Linux/ Creating directory /media/ayman/Linux/ Verifying archive integrity... 100% All good. Uncompressing FeTS Linux Installer 100% chown: changing ownership of './Python-3.6.5/build/lib.linux-x86_64-3.6/__pycache__/_sysconfigdata_m_linux_x86_64-linux-gnu.cpython-36.opt-1.pyc': Operation not permitted chown: changing ownership of './Python-3.6.5/build/lib.linux-x86_64-3.6/__pycache__/_sysconfigdata_m_linux_x86_64-linux-gnu.cpython-36.opt-2.pyc': Operation not permitted chown: changing ownership of './Python-3.6.5/build/scripts-3.6/2to3-3.6': Operation not permitted chown: changing ownership of './Python-3.6.5/build/scripts-3.6/idle3.6': Operation not permitted chown: changing ownership of './Python-3.6.5/build/scripts-3.6/pydoc3.6': Operation not permitted chown: changing ownership of './Python-3.6.5/build/scripts-3.6/pyvenv-3.6': Operation not permitted chown: changing ownership of './Python-3.6.5/Lib/xml/etree/__pycache__/cElementTree.cpython-36.pyc': Operation not permitted chown: changing ownership of './Python-3.6.5/Lib/xml/etree/__pycache__/ElementTree.cpython-36.pyc': 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'./Python-3.6.5/Lib/urllib/__pycache__': Operation not permitted ./linux-makeself: line 187: nvcc: command not found cat: /usr/local/cuda/version.txt: No such file or directory Sorry, we could not automatically detect the CUDA version on your machine. Please install CUDA, or specify your CUDA version via the -- --cudaVersion parameters. For instance, if you have CUDA release 11.0, run: FeTS__Installer.bin -- --cudaVersion 11.0 Visit https://fets-ai.github.io/Front-End/ for details. Exiting. Ayman

…

________________________________ From: Sarthak Pati ***@***.***> Sent: Friday, June 30, 2023 7:02 PM To: FeTS-AI/Front-End ***@***.***> Cc: Nada, Ayman ***@***.***>; Author ***@***.***> Subject: Re: [FeTS-AI/Front-End] Missing FeTS_CLI_Segment of the installed version (Issue #62) WARNING: This message has originated from an External Source. This may be a phishing expedition that can result in unauthorized access to our IT System. Please use proper judgment and caution when opening attachments, clicking links, or responding to this email. Can you provide the exact steps you followed and the error message? — Reply to this email directly, view it on GitHub<#62 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AZK24BG7EAGL4ROWLPUJSQTXN5SJVANCNFSM6AAAAAAZZATFEM>. You are receiving this because you authored the thread.Message ID: ***@***.***>

[amnmed09]

I also deleted the old file and redownloaded it. Then, run this command: (base) ***@***.***:~/Downloads$ chmod +x FeTS_0.0.9_Installer.bin (base) ***@***.***:~/Downloads$ ./FeTS_0.0.9_Installer.bin --target /media/ayman/Linux/FeTS/ Creating directory /media/ayman/Linux/FeTS/ Verifying archive integrity... 100% All good. Uncompressing FeTS Linux Installer 100% ./linux-makeself: line 187: nvcc: command not found cat: /usr/local/cuda/version.txt: No such file or directory Sorry, we could not automatically detect the CUDA version on your machine. Please install CUDA, or specify your CUDA version via the -- --cudaVersion parameters. For instance, if you have CUDA release 11.0, run: FeTS__Installer.bin -- --cudaVersion 11.0 Visit https://fets-ai.github.io/Front-End/ for details. Exiting. Ayman

…

________________________________ From: Nada, Ayman ***@***.***> Sent: Friday, June 30, 2023 7:10 PM To: FeTS-AI/Front-End ***@***.***>; FeTS-AI/Front-End ***@***.***> Cc: Author ***@***.***> Subject: Re: [FeTS-AI/Front-End] Missing FeTS_CLI_Segment of the installed version (Issue #62) Here you are: (base) ***@***.***:~/Downloads$ chmod +x FeTS_0.0.9_Installer.bin (base) ***@***.***:~/Downloads$ ./FeTS_0.0.9_Installer.bin --target /media/ayman/Linux/ Creating directory /media/ayman/Linux/ Verifying archive integrity... 100% All good. 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'./Python-3.6.5/Lib/urllib/__pycache__': Operation not permitted ./linux-makeself: line 187: nvcc: command not found cat: /usr/local/cuda/version.txt: No such file or directory Sorry, we could not automatically detect the CUDA version on your machine. Please install CUDA, or specify your CUDA version via the -- --cudaVersion parameters. For instance, if you have CUDA release 11.0, run: FeTS__Installer.bin -- --cudaVersion 11.0 Visit https://fets-ai.github.io/Front-End/ for details. Exiting. Ayman

________________________________ From: Sarthak Pati ***@***.***> Sent: Friday, June 30, 2023 7:02 PM To: FeTS-AI/Front-End ***@***.***> Cc: Nada, Ayman ***@***.***>; Author ***@***.***> Subject: Re: [FeTS-AI/Front-End] Missing FeTS_CLI_Segment of the installed version (Issue #62) WARNING: This message has originated from an External Source. This may be a phishing expedition that can result in unauthorized access to our IT System. Please use proper judgment and caution when opening attachments, clicking links, or responding to this email. Can you provide the exact steps you followed and the error message? — Reply to this email directly, view it on GitHub<#62 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AZK24BG7EAGL4ROWLPUJSQTXN5SJVANCNFSM6AAAAAAZZATFEM>. You are receiving this because you authored the thread.Message ID: ***@***.***>

[sarthakpati]

Hi Ayman,

If you want to run inference using the BraTS-winning algorithms, you will need the GPU. However, using the FeTS consensus model should work via the optimized variants. For details, please see this page.