elfasta-conversion error: bufio.Scanner: token too long #68
Description
Hi,
I am trying to run elprep for variant calling, and I am trying first to convert the reference into elfasta format.
I have tried it in too different server, one with the up-to-date version, and other with an older 5.X version and the code
elprep fasta-to-elfasta myse_Super_myo_final.fa myse_Super_myo_final.elfasta
gives me the following error:
2023/02/28 15:07:09 Created log file at /users/PHS0338/jpac1984/logs/elprep/elprep-2023-02-28-15-07-09-560735636-EST.log
2023/02/28 15:07:09 Command line: [elprep fasta-to-elfasta myse_Super_myo_final.fa myse_Super_myo_final.elfasta]
2023/02/28 15:07:09 bufio.Scanner: token too long
I have tried running elprep within conda and with the latest release and both times I got the same error.
Hope this error can be fixed soon.
Thanks;