Nextflow Process: Extract IGRs and CDS

[kenibrewer]

Build a Nextflow process with the following inputs:

• A genome fasta file
• A genome annotation file (GFF or GTF)

Parameters:

• Overlap
• Minimum length

Output:

• A fasta consisting of just the IGRs
• A fasta consisting of just protein-coding regions
• An IGR feature file consisting of GC content, length, other features calculated for each IGR