Warning: Layer counts isn't present in the assay object; returning NULL

[kiwipeel]

Hello,

I am getting this error after I use runEscape on my seurat object. I am sure my seurat object has counts layer..

[ncborcherding]

@kiwipeel,

Unfortunately without more information like your sessionInfo() and a reproducible example, I will likely be unable to identify and fix your issue.

If you get a chance, please provide the above information and I would be happy to troubleshoot.

Nick